SitesBLAST – Find functional sites

 

SitesBLAST

Comparing HSERO_RS11445 FitnessBrowser__HerbieS:HSERO_RS11445 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
42% identity, 98% coverage: 1:216/221 of query aligns to 1:215/215 of 4ymtC

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4ymtC
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R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
42% identity, 96% coverage: 1:213/221 of query aligns to 1:212/214 of 4ymwC

query
sites
4ymwC
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R

Query Sequence

>HSERO_RS11445 FitnessBrowser__HerbieS:HSERO_RS11445
MKLDFSGVWESWPSLVHGTLVTVEITAASLVVGCVLGLLVGLGRLSPQRRVIYGLCTIYL
TLVRGTPLLVQLFLWFFGLPHVGVILPAYVCGILGLGIYSGAYVSEIVRGAIQSIERGQM
EAARSLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKII
SVTYRSLETYLAIALIYLLLTSVTTLILRRVEKVLRSEGRV

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory