Comparing HSERO_RS11480 FitnessBrowser__HerbieS:HSERO_RS11480 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
38% identity, 85% coverage: 30:296/314 of query aligns to 2:267/287 of 5dteB
1dbpA Identical mutations at corresponding positions in two homologous proteins with non-identical effects (see paper)
34% identity, 86% coverage: 30:299/314 of query aligns to 1:259/271 of 1dbpA
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
33% identity, 90% coverage: 33:314/314 of query aligns to 3:270/274 of 2ioyA
1rpjA Crystal structure of d-allose binding protein from escherichia coli (see paper)
35% identity, 78% coverage: 32:275/314 of query aligns to 3:247/288 of 1rpjA
1gudA Hinge-bending motion of d-allose binding protein from escherichia coli: three open conformations (see paper)
35% identity, 78% coverage: 32:275/314 of query aligns to 3:247/288 of 1gudA
4zjpA Structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose
33% identity, 84% coverage: 33:296/314 of query aligns to 5:256/270 of 4zjpA
8wlbA X-ray structure of enterobacter cloacae allose-binding protein in complex with d-psicose (see paper)
34% identity, 78% coverage: 32:275/314 of query aligns to 3:247/288 of 8wlbA
8wl9A X-ray structure of enterobacter cloacae allose-binding protein in complex with d-ribose (see paper)
34% identity, 78% coverage: 32:275/314 of query aligns to 3:247/288 of 8wl9A
4wutA Crystal structure of an abc transporter solute binding protein (ipr025997) from agrobacterium vitis (avi_5133, target efi-511220) with bound d-fucose
32% identity, 90% coverage: 32:314/314 of query aligns to 2:277/290 of 4wutA
2fn8A Thermotoga maritima ribose binding protein ribose bound form (see paper)
29% identity, 91% coverage: 30:314/314 of query aligns to 1:280/292 of 2fn8A
2h3hA Crystal structure of the liganded form of thermotoga maritima glucose binding protein (see paper)
29% identity, 78% coverage: 70:313/314 of query aligns to 37:285/313 of 2h3hA
Sites not aligning to the query:
3c6qC Apo and ligand-bound form of a thermophilic glucose/xylose binding protein
29% identity, 76% coverage: 75:313/314 of query aligns to 42:285/305 of 3c6qC
Sites not aligning to the query:
5ibqA Crystal structure of an abc solute binding protein from rhizobium etli cfn 42 (rhe_pf00037,target efi-511357) in complex with alpha-d-apiose
31% identity, 82% coverage: 33:288/314 of query aligns to 5:251/287 of 5ibqA
4ry0A Crystal structure of ribose transporter solute binding protein rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex with d-ribose
31% identity, 82% coverage: 33:288/314 of query aligns to 5:251/287 of 4ry0A
4irxA Crystal structure of caulobacter myo-inositol binding protein bound to myo-inositol (see paper)
29% identity, 84% coverage: 32:295/314 of query aligns to 10:278/296 of 4irxA
7e7mC Crystal structure analysis of the streptococcus agalactiae ribose binding protein rbsb
31% identity, 83% coverage: 32:291/314 of query aligns to 10:253/284 of 7e7mC
4yo7A Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
29% identity, 86% coverage: 32:301/314 of query aligns to 7:269/287 of 4yo7A
P39325 Galactofuranose-binding protein YtfQ from Escherichia coli (strain K12) (see 2 papers)
34% identity, 67% coverage: 66:274/314 of query aligns to 58:267/318 of P39325
Sites not aligning to the query:
6gt9A Crystal structure of ganp, a glucose-galactose binding protein from geobacillus stearothermophilus, in complex with galactose
28% identity, 77% coverage: 35:275/314 of query aligns to 11:243/283 of 6gt9A
2vk2A Crystal structure of a galactofuranose binding protein (see paper)
34% identity, 67% coverage: 66:274/314 of query aligns to 36:245/296 of 2vk2A
Sites not aligning to the query:
>HSERO_RS11480 FitnessBrowser__HerbieS:HSERO_RS11480
MNKFTRRHFAIAALACAVLPGAAMAQTPAKPKVALVMKSLANEFFLNMENGAREYQKANA
SKFDLIANGIKDEQDTANQIKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDAGIIVVN
IDNKLDDAALKEKGITVPFVGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTFNAQQR
TLGFQDAMKDVGANVVTVQSGQWEIDQGNKVAASILNAHPDIKAILAGNDNMALGAVAAI
RAAGKTGKVQLVGYDNINAIKPMLKDGRVLATVDQFAQQQAVFGIETALKALSEKKPQSA
LGGVVETKVSLVTK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory