SitesBLAST
Comparing HSERO_RS15395 FitnessBrowser__HerbieS:HSERO_RS15395 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4iymC Crystal structure of putative methylmalonate-semialdehyde dehydrogenase from sinorhizobium meliloti 1021 complexed with NAD, target 011934
49% identity, 94% coverage: 12:485/506 of query aligns to 10:485/491 of 4iymC
- active site: N153 (= N155), K176 (= K178), F250 (≠ M252), C284 (= C286), E386 (= E386), Q466 (≠ P466)
- binding nicotinamide-adenine-dinucleotide: I149 (= I151), T150 (= T152), P151 (≠ A153), F152 (= F154), N153 (= N155), F154 (= F156), K176 (= K178), K209 (≠ P211), V212 (≠ A214), F226 (= F228), V227 (≠ I229), G228 (= G230), S229 (= S231), I232 (≠ V234), G251 (≠ M253), C284 (= C286), E386 (= E386), F388 (= F388)
4zz7A Crystal structure of methylmalonate-semialdehyde dehydrogenase (dddc) from oceanimonas doudoroffii (see paper)
48% identity, 93% coverage: 13:485/506 of query aligns to 8:481/489 of 4zz7A
- active site: N149 (= N155), K172 (= K178), L246 (≠ M252), C280 (= C286), E382 (= E386), A462 (≠ P466)
- binding nicotinamide-adenine-dinucleotide: T146 (= T152), P147 (≠ A153), F148 (= F154), N149 (= N155), K172 (= K178), E175 (= E181), K205 (≠ P211), V208 (≠ A214), F222 (= F228), V223 (≠ I229), G224 (= G230), S225 (= S231), I228 (≠ V234), L246 (≠ M252), G247 (≠ M253), C280 (= C286), E382 (= E386), F384 (= F388)
P42412 Malonate-semialdehyde dehydrogenase; MSA dehydrogenase; Methylmalonate-semialdehyde dehydrogenase; MMSA dehydrogenase; MMSDH; MSDH; EC 1.2.1.27 from Bacillus subtilis (strain 168) (see 3 papers)
46% identity, 96% coverage: 4:489/506 of query aligns to 2:485/487 of P42412
- C36 (≠ A38) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-160; A-287; A-351 and A-413.
- R107 (= R109) mutation to L: At least 50-fold decrease of the second-order rate constant for the acylation step.
- A150 (≠ T152) binding NAD(+)
- F152 (= F154) binding NAD(+)
- C160 (= C162) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-36; A-287; A-351 and A-413.
- K176 (= K178) binding NAD(+)
- E179 (= E181) binding NAD(+)
- R180 (≠ Q182) binding NAD(+)
- S229 (= S231) binding NAD(+)
- T251 (≠ M253) binding NAD(+)
- R283 (= R285) mutation to L: At least 50-fold decrease of the second-order rate constant for the acylation step.
- C287 (≠ N289) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-36; A-160; A-351 and A-413.
- C351 (≠ L352) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-36; A-160; A-287 and A-413.
- E382 (= E386) binding NAD(+)
- C413 (≠ S417) mutation to A: No effect at either the structural or enzymatic levels; when associated with A-36; A-160; A-287 and A-351.
1t90A Crystal structure of methylmalonate semialdehyde dehydrogenase from bacillus subtilis
47% identity, 94% coverage: 12:489/506 of query aligns to 8:483/484 of 1t90A
- active site: N151 (= N155), K174 (= K178), L248 (≠ M252), C282 (= C286), E380 (= E386), A460 (≠ P466)
- binding nicotinamide-adenine-dinucleotide: I147 (= I151), A148 (≠ T152), P149 (≠ A153), F150 (= F154), N151 (= N155), W159 (≠ F163), K174 (= K178), E177 (= E181), R178 (≠ Q182), H207 (≠ P211), V225 (≠ I229), G226 (= G230), S227 (= S231), V230 (= V234), L248 (≠ M252), T249 (≠ M253), C282 (= C286), E380 (= E386), F382 (= F388)
5tjrD X-ray crystal structure of a methylmalonate semialdehyde dehydrogenase from pseudomonas sp. Aac (see paper)
46% identity, 93% coverage: 13:485/506 of query aligns to 7:455/468 of 5tjrD
- active site: N144 (= N155), K167 (= K178), L241 (≠ M252), C270 (= C286), E356 (= E386), A436 (≠ P466)
- binding adenosine-5'-diphosphate: I140 (= I151), T141 (= T152), F143 (= F154), K167 (= K178), E170 (= E181), K200 (≠ P211), F217 (= F228), S220 (= S231), I223 (≠ V234)
6wsbA Crystal structure of a betaine aldehyde dehydrogenase from burkholderia pseudomallei bound to cofactor NAD (see paper)
35% identity, 93% coverage: 11:481/506 of query aligns to 8:477/489 of 6wsbA
- active site: N152 (= N155), E250 (vs. gap), C284 (= C286), E462 (≠ P466)
- binding nicotinamide-adenine-dinucleotide: I148 (= I151), G149 (≠ T152), A150 (= A153), W151 (≠ F154), N152 (= N155), K175 (= K178), E178 (= E181), G208 (≠ P211), G211 (≠ A214), A212 (≠ N215), F225 (= F228), T226 (≠ I229), G227 (= G230), G228 (≠ S231), T231 (≠ V234), V235 (≠ I238), E250 (vs. gap), L251 (≠ M253), G252 (= G254), C284 (= C286), E385 (= E386), F387 (= F388)
4cazA Crystal structure of betaine aldehyde dehydrogenase from pseudomonas aeruginosa in complex with nadh
34% identity, 93% coverage: 11:481/506 of query aligns to 8:478/489 of 4cazA
- active site: N152 (= N155), K175 (= K178), E251 (vs. gap), C285 (= C286), E386 (= E386), E463 (≠ P466)
- binding [[(2R,3S,4R,5R)-5-[(3R)-3-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanidyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphate: I148 (= I151), G149 (≠ T152), W151 (≠ F154), N152 (= N155), K175 (= K178), E178 (= E181), G208 (= G210), G212 (≠ A214), F226 (= F228), T227 (≠ I229), G228 (= G230), G229 (≠ S231), T232 (≠ V234), V236 (≠ I238), E251 (vs. gap), L252 (≠ M253), C285 (= C286), E386 (= E386), F388 (= F388)
2woxA Betaine aldehyde dehydrogenase from pseudomonas aeruginosa with NAD(p) h-catalytic thiol adduct. (see paper)
34% identity, 93% coverage: 11:481/506 of query aligns to 8:478/489 of 2woxA
- active site: N152 (= N155), K175 (= K178), E251 (vs. gap), C285 (= C286), E386 (= E386), E463 (≠ P466)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: I148 (= I151), G149 (≠ T152), W151 (≠ F154), N152 (= N155), K175 (= K178), S177 (= S180), E178 (= E181), G208 (= G210), G212 (≠ A214), F226 (= F228), T227 (≠ I229), G228 (= G230), G229 (≠ S231), T232 (≠ V234), V236 (≠ I238), E251 (vs. gap), L252 (≠ M253), C285 (= C286), E386 (= E386), F388 (= F388)
2wmeA Crystallographic structure of betaine aldehyde dehydrogenase from pseudomonas aeruginosa (see paper)
34% identity, 93% coverage: 11:481/506 of query aligns to 8:478/489 of 2wmeA
- active site: N152 (= N155), K175 (= K178), E251 (vs. gap), C285 (= C286), E386 (= E386), E463 (≠ P466)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: G149 (≠ T152), W151 (≠ F154), K175 (= K178), S177 (= S180), E178 (= E181), G208 (= G210), G212 (≠ A214), F226 (= F228), G228 (= G230), G229 (≠ S231), T232 (≠ V234), V236 (≠ I238)
Q9HTJ1 NAD/NADP-dependent betaine aldehyde dehydrogenase; BADH; EC 1.2.1.8 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 2 papers)
34% identity, 93% coverage: 11:481/506 of query aligns to 9:479/490 of Q9HTJ1
- GAWN 150:153 (≠ TAFN 152:155) binding NADPH
- K162 (≠ M164) active site, Charge relay system
- KPSE 176:179 (= KPSE 178:181) binding NADPH
- G209 (= G210) binding NADPH
- GTST 230:233 (≠ STHV 231:234) binding NADPH
- E252 (vs. gap) active site, Proton acceptor
- C286 (= C286) binding covalent; modified: Cysteine sulfenic acid (-SOH)
- E387 (= E386) binding NADPH
- E464 (≠ P466) active site, Charge relay system
4pz2B Structure of zm aldh2-6 (rf2f) in complex with NAD (see paper)
35% identity, 93% coverage: 11:482/506 of query aligns to 13:485/494 of 4pz2B
- active site: N159 (= N155), K182 (= K178), E258 (≠ M252), C292 (= C286), E392 (= E386), D469 (≠ P466)
- binding nicotinamide-adenine-dinucleotide: I155 (= I151), I156 (≠ T152), P157 (≠ A153), W158 (≠ F154), N159 (= N155), M164 (≠ L160), K182 (= K178), A184 (≠ S180), E185 (= E181), G215 (= G210), G219 (≠ A214), F233 (= F228), T234 (≠ I229), G235 (= G230), S236 (= S231), V239 (= V234), E258 (≠ M252), L259 (≠ M253), C292 (= C286), E392 (= E386), F394 (= F388)
8skfA Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (lattice translocation disorder)
34% identity, 93% coverage: 11:481/506 of query aligns to 16:486/497 of 8skfA
- binding calcium ion: T33 (≠ V28), I34 (≠ L29), D100 (≠ E95), V187 (≠ Q182)
- binding nicotinamide-adenine-dinucleotide: I156 (= I151), G157 (≠ T152), A158 (= A153), W159 (≠ F154), K183 (= K178), E186 (= E181), G216 (= G210), G220 (≠ A214), T235 (≠ I229), G236 (= G230), G237 (≠ S231), S240 (≠ V234), K243 (≠ H237), E259 (vs. gap), C293 (= C286), F396 (= F388)
8vr1A Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (ctp bound)
34% identity, 93% coverage: 11:481/506 of query aligns to 7:477/488 of 8vr1A
8vr0A Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (gmp bound)
34% identity, 93% coverage: 11:481/506 of query aligns to 7:477/488 of 8vr0A
8vqzA Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (cmp bound)
34% identity, 93% coverage: 11:481/506 of query aligns to 7:477/488 of 8vqzA
8vqwC Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (coa bound)
34% identity, 93% coverage: 11:481/506 of query aligns to 7:477/488 of 8vqwC
- binding coenzyme a: I147 (= I151), W150 (≠ F154), K174 (= K178), S176 (= S180), E177 (= E181), G207 (= G210), G211 (≠ A214), F225 (= F228), G227 (= G230), G228 (≠ S231), S231 (≠ V234), H331 (≠ A332), F387 (= F388)
8vj3A Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (fad bound)
34% identity, 93% coverage: 11:481/506 of query aligns to 7:477/488 of 8vj3A
8uzoA Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (adp bound)
34% identity, 93% coverage: 11:481/506 of query aligns to 7:477/488 of 8uzoA
8uznA Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (amp bound)
34% identity, 93% coverage: 11:481/506 of query aligns to 7:477/488 of 8uznA
- binding adenosine monophosphate: I147 (= I151), G148 (≠ T152), K174 (= K178), S176 (= S180), E177 (= E181), G207 (= G210), G211 (≠ A214), F225 (= F228), G228 (≠ S231), S231 (≠ V234), K234 (≠ H237)
8uzmA Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (NADPH bound)
34% identity, 93% coverage: 11:481/506 of query aligns to 7:477/488 of 8uzmA
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: G148 (≠ T152), W150 (≠ F154), K174 (= K178), S176 (= S180), E177 (= E181), G207 (= G210), G211 (≠ A214), F225 (= F228), T226 (≠ I229), G227 (= G230), G228 (≠ S231), S231 (≠ V234), E250 (vs. gap), G252 (= G254), C284 (= C286), E385 (= E386), F387 (= F388)
Query Sequence
>HSERO_RS15395 FitnessBrowser__HerbieS:HSERO_RS15395
MSQANIPNVPLYLNGEKVQSTSKEWRDVLNPATQEVVARVPFATKEEVDRAVANAKETFK
TWRNTSLAQRMRIMLKFQQLLRENIAPLAELITREHGKTLPDAEGEVMRGLEVVEHACSI
TSLQLGELAENVAGGVDVYTLYQPLGVGAGITAFNFPVMLPCFMFPIAVACGNTFVLKPS
EQDPTSSLFLVELANQAGLPPGVLNVVHGGPDVANMICDHPDIKAVSFIGSTHVGTHIYR
RASEAGKRAQCMMGAKNHCIVLPDAPKDQAINNLLGAAFGAAGQRCMANSVVVLVGQTRE
WIPEIVERSKAMKVGPGTDRKADVGPLVSKAAKERVERLIASGVEQGAKLLLDGRNCKVA
GSENGNFVGPTVFTGVKPEMDIYTQEIFGPAMCIVELDTLDEAIAFINANPNGNGTSIFT
SSGYAARKFQNEIDVGQVGINVPIPVPVAYFSFTGSRASKLGDLGPNGKQAVTFWTQTKT
VTARWYAPDEEAGGQHHHHPEVRRAA
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory