SitesBLAST – Find functional sites

 

SitesBLAST

Comparing HSERO_RS17870 FitnessBrowser__HerbieS:HSERO_RS17870 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

1sz2B Crystal structure of e. Coli glucokinase in complex with glucose (see paper)
42% identity, 94% coverage: 18:329/333 of query aligns to 5:316/320 of 1sz2B

query
sites
1sz2B
L
 
L
L
 
V
A
 
G
D
 
D
I
 
V
G
 
G
G
 
G
T
 
T
N
 
N
A
 
A
R
 
R
F
 
L
A
 
A
L
 
L
-
 
C
E
 
D
T
 
I
G
 
A
P
 
S
G
 
G
R
 
E
I
 
I
E
 
S
Q
 
Q
V
 
A
Q
 
K
I
 
T
L
 
Y
R
 
S
G
 
G
A
 
L
D
 
D
Y
 
Y
G
 
P
E
 
S
F
 
L
T
 
E
D
 
A
A
 
V
V
 
I
Q
 
R
A
 
V
Y
 
Y
L
 
L
K
 
E
L
 
-
A
 
E
G
 
H
H
 
K
P
 
V
P
 
E
V
 
V
R
 
K
H
 
D
A
 
G
V
 
C
V
 
I
A
 
A
I
 
I
A
 
A
N
x
C
P
|
P
V
 
I
Q
 
T
G
 
G
D
 
D
Q
 
W
I
 
V
K
 
A
M
 
M
T
 
T
N
 
N
H
 
H
D
 
T
W
 
W
A
 
A
F
 
F
S
 
S
I
 
I
E
 
A
A
 
E
A
 
M
R
 
K
Q
 
K
L
 
N
L
 
L
G
 
G
F
 
F
E
 
S
L
 
H
L
 
L
L
 
E
V
 
I
V
 
I
N
|
N
D
|
D
F
 
F
T
 
T
A
 
A
L
 
V
S
 
S
M
 
M
A
 
A
V
 
I
P
 
P
Q
 
M
L
 
L
R
 
K
A
 
K
D
 
E
E
 
H
L
 
L
Q
 
I
Q
 
Q
V
 
F
G
 
G
G
 
G
G
 
A
A
 
E
P
 
P
K
 
V
P
 
E
G
 
G
A
 
K
P
 
P
I
 
I
G
 
A
L
 
V
V
 
Y
G
 
G
A
 
A
G
 
G
T
 
T
G
 
G
L
|
L
G
|
G
V
 
V
G
 
A
G
 
H
L
 
L
L
 
V
H
 
H
A
 
V
D
 
D
G
 
K
H
 
R
W
 
W
L
 
V
P
 
S
L
 
L
A
 
P
S
 
G
E
|
E
G
 
G
G
 
G
H
|
H
A
 
V
A
 
D
F
 
F
A
 
A
P
 
P
A
 
N
D
 
S
P
 
E
R
 
E
E
 
E
A
 
A
A
 
I
V
 
I
L
 
L
A
 
E
Y
 
I
A
 
L
W
 
R
Q
 
A
F
 
E
H
 
I
E
 
G
H
 
H
V
 
V
S
 
S
A
 
A
E
|
E
R
 
R
L
 
V
V
 
L
S
 
S
G
 
G
P
 
P
G
 
G
L
 
L
E
 
V
L
 
N
I
 
L
H
 
Y
R
 
R
A
 
A
L
 
I
L
 
V
A
 
K
I
 
A
D
 
D
G
 
N
H
 
R
P
 
L
A
 
P
A
 
E
E
 
N
L
 
L
S
 
K
A
 
P
A
 
K
Q
 
D
I
 
I
V
 
T
E
 
E
G
 
R
A
 
A
R
 
L
Q
 
A
H
 
D
G
 
S
D
 
C
A
 
T
L
 
D
C
 
C
Q
 
R
E
 
R
T
 
A
L
 
L
A
 
S
L
 
L
F
 
F
C
 
C
S
 
V
M
 
I
L
 
M
G
 
G
T
 
R
V
 
F
A
 
G
A
 
G
D
 
N
L
 
L
A
 
A
L
 
L
T
 
N
L
 
L
G
 
G
A
 
T
L
 
F
G
 
G
G
 
G
I
 
V
Y
 
F
I
 
I
G
 
A
V
 
G
G
 
G
V
 
I
V
 
V
P
 
P
H
 
R
L
 
F
G
 
L
D
 
E
Y
 
F
F
 
F
A
 
K
R
 
A
S
 
S
P
 
G
F
 
F
R
 
R
A
 
A
R
 
A
F
 
F
E
 
E
N
 
D
K
 
K
G
 
G
R
 
R
M
 
F
S
 
K
V
 
E
L
 
Y
T
 
V
K
 
H
A
 
D
I
 
I
P
 
P
T
 
V
Y
 
Y
V
 
L
I
 
I
T
 
V
A
 
H
E
 
D
Y
 
N
P
 
P
A
 
G
F
 
L
T
 
L
G
 
G
V
 
S
S
 
G
A
 
A
I
 
H
L
 
L
A
 
R
D
 
Q
R
 
T
L
 
L

Query Sequence

>HSERO_RS17870 FitnessBrowser__HerbieS:HSERO_RS17870
MQHVPTSPAGLHADGPRLLADIGGTNARFALETGPGRIEQVQILRGADYGEFTDAVQAYL
KLAGHPPVRHAVVAIANPVQGDQIKMTNHDWAFSIEAARQLLGFELLLVVNDFTALSMAV
PQLRADELQQVGGGAPKPGAPIGLVGAGTGLGVGGLLHADGHWLPLASEGGHAAFAPADP
REAAVLAYAWQFHEHVSAERLVSGPGLELIHRALLAIDGHPAAELSAAQIVEGARQHGDA
LCQETLALFCSMLGTVAADLALTLGALGGIYIGVGVVPHLGDYFARSPFRARFENKGRMS
VLTKAIPTYVITAEYPAFTGVSAILADRLATQQ

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory