SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing HSERO_RS18795 FitnessBrowser__HerbieS:HSERO_RS18795 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

4k28A 2.15 angstrom resolution crystal structure of a shikimate dehydrogenase family protein from pseudomonas putida kt2440 in complex with NAD+ (see paper)
32% identity, 90% coverage: 6:257/281 of query aligns to 2:252/266 of 4k28A

query
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4k28A

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binding manganese (ii) ion: C153 (≠ F161), C164 (≠ L172), V176 (= V184), F180 (≠ Q188)
binding nicotinamide-adenine-dinucleotide: I129 (≠ V137), G130 (= G138), G132 (= G140), G133 (= G141), V134 (= V142), C153 (≠ F161), D154 (= D162), P155 (≠ T163), R159 (≠ G167), S193 (≠ T201), P194 (= P202), V222 (≠ C227), G245 (= G250), M248 (= M253), A249 (≠ L254)

2hk9B Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with shikimate and NADP+ at 2.2 angstrom resolution (see paper)
28% identity, 90% coverage: 4:257/281 of query aligns to 2:242/267 of 2hk9B

query
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2hk9B

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binding nadp nicotinamide-adenine-dinucleotide phosphate: V67 (≠ I70), G130 (= G138), G133 (= G141), A134 (≠ V142), N153 (= N164), R154 (= R165), T155 (≠ A166), K158 (≠ E169), T188 (= T201), S189 (≠ P202), V190 (≠ L203), I214 (≠ C227), M238 (= M253), L239 (= L254)
binding (3r,4s,5r)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid: S19 (≠ V21), S21 (≠ A23), N64 (≠ F67), T66 (≠ S69), K70 (= K73), N91 (= N94), D106 (= D110), Y216 (≠ M229), L239 (= L254), Q242 (= Q257)

2hk9A Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with shikimate and NADP+ at 2.2 angstrom resolution (see paper)
28% identity, 90% coverage: 4:257/281 of query aligns to 2:242/269 of 2hk9A

query
sites
2hk9A

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binding 2'-monophosphoadenosine-5'-diphosphate: V67 (≠ I70), G132 (= G140), G133 (= G141), A134 (≠ V142), N153 (= N164), R154 (= R165), T155 (≠ A166), T188 (= T201), S189 (≠ P202), V190 (≠ L203)
binding (3r,4s,5r)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid: S19 (≠ V21), S21 (≠ A23), N64 (≠ F67), K70 (= K73), N91 (= N94), D106 (= D110), Y216 (≠ M229), L239 (= L254), Q242 (= Q257)

O67049 Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus (strain VF5) (see paper)
28% identity, 90% coverage: 4:257/281 of query aligns to 2:242/269 of O67049

query
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O67049

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SLS 19:21 (≠ VKA 21:23) binding shikimate
D82 (≠ L85) binding NADP(+)
N91 (= N94) binding shikimate
D106 (= D110) binding shikimate
GAGGA 130:134 (≠ GTGGV 138:142) binding NADP(+)
I214 (≠ C227) binding NADP(+)
Y216 (≠ M229) binding shikimate
G235 (= G250) binding NADP(+)
Q242 (= Q257) binding shikimate

3tnlA 1.45 angstrom crystal structure of shikimate 5-dehydrogenase from listeria monocytogenes in complex with shikimate and NAD.
26% identity, 98% coverage: 4:278/281 of query aligns to 6:286/288 of 3tnlA

query
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3tnlA

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R

E

T

A

A

G

A

H

D

D

R

I

P

I

L

-

V

-

W

-

N

-

Q

G

T

K

R

K

A

M

L

T

V

I

V

C

G
|
G

T
x
A

G
|
G

V
x
A

G

A

C

T

A

A

I

I

V

C

A

I

S

Q

L

A

A

A

A

L

Q

D

G

G

V

V

A

K

E

E

I

I

S

S

V

I

F

F

-
x
N

-
x
R

-

K

D
|
D

T

D

N
x
F

R

Y

A

A

G

N

A

A

E

E

A

K

L

T

L

V

A

E

R

K

A

I

A

N

A

S

A

K

F

T

P

D

A

C

T

K

R

A

V

Q

G

L

F

F

A

D

Q

I

P

E

D

D

A

H

S

E

G

Q

F

L

D

R

-

K

-

E

-

I

-

A

-

E

-

S

-

V

L

I

L

F

V

T

N

N

C

A

T
|
T

P

G

L
x
V

G

G

M
|
M

H

K

-

P

-
x
F

V

E

G

G

D

E

P

T

M

L

P

L

F

P

A

S

L

A

E

D

G

M

V

L

R

R

R

P

D

E

A

L

I

I

V

V

A

S

D

D

C
x
V

G

V

M
x
Y

K

K

I

P

E

T

M

K

S

T

Q

R

L

L

V

E

Q

I

A

A

Q

E

A

E

L

Q

G

G

C

C

R

Q

I

T

Q

L

K

N

G

G

K

L

E

G

M
|
M

L
x
M

I

L

E

W

Q
|
Q

A

G

P

A

L

K

Y

A

L

F

E

E

L

I

F

W

G

T

W

H

P

K

G

E

V

M

S

P

A

V

D

D

D

Y

F

I

R

K

A

E

L

I

binding nicotinamide-adenine-dinucleotide: M71 (≠ I70), G134 (= G138), A135 (≠ T139), G136 (= G140), G137 (= G141), A138 (≠ V142), N158 (vs. gap), R159 (vs. gap), D161 (= D162), F163 (≠ N164), T207 (= T201), V209 (≠ L203), M211 (= M205), F214 (vs. gap), V235 (≠ C227), Y237 (≠ M229), M261 (= M253), M262 (≠ L254)
binding (3r,4s,5r)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid: S23 (≠ V21), S25 (≠ A23), N68 (≠ F67), S70 (= S69), K74 (= K73), N95 (= N94), D110 (= D110), Q265 (= Q257)

3tozA 2.2 angstrom crystal structure of shikimate 5-dehydrogenase from listeria monocytogenes in complex with NAD.
26% identity, 98% coverage: 4:278/281 of query aligns to 9:289/291 of 3tozA

query
sites
3tozA

I

I

T

T

G

G

T

H

T

T

R

E

I

L

F

I

P

G

V

L

I

I

G

A

W

T

P

P

V

I

E

R

Q

H

V

S

K

L

A

S

P

P

T

T

L

M

F

H

N

N

A

E

Y

A

F

F

E

A

H

K

H

L

G

G

I

L

D

D

A

Y

R

V

V

Y

I

L

P

A

F

F

K

E

I

V

E

G

P

D

E

K

R

E

Y

L

C

K

E

D

A

V

V

V

R

Q

M

G

F

F

M

-

K

R

T

A

E

M

N

N

V

L

G

R

G

G

I

W

F

N

V

V

S

S

I

M

P

P

H

N

K

K

P

T

M

N

T

I

L

H

E

K

A

Y

V

L

E

D

Q

K

S

L

T

S

L

P

R

A

A

A

R

E

V

L

A

V

G

G

A

A

C

V

N

N

A

T

V

V

Y

V

R

N

D

D

A

-

D

D

G

G

V

V

I

L

W

T

G

G

D

H

L

I

I

T

D

D

G

G

E

T

G

G

F

Y

I

M

R

R

A

A

L

L

A

K

R

E

T

A

A

G

A

H

D

D

R

I

P

I

L

-

V

-

W

-

N

-

Q

G

T

K

R

K

A

M

L

T

V

I

V

C

G
|
G

T
x
A

G
|
G

V
x
A

G

A

C

T

A

A

I

I

V

C

A

I

S

Q

L

A

A

A

A

L

Q

D

G

G

V

V

A

K

E

E

I

I

S

S

V

I

F

F

-
x
N

-
x
R

-

K

D
|
D

T

D

N
x
F

R

Y

A

A

G

N

A

A

E

E

A

K

L

T

L

V

A

E

R

K

A

I

A

N

A

S

A

K

F

T

P

D

A

C

T

K

R

A

V

Q

G

L

F

F

A

D

Q

I

P

E

D

D

A

H

S

E

G

Q

F

L

D

R

-

K

-

E

-

I

-

A

-

E

-

S

-

V

L

I

L

F

V

T

N

N

C

A

T
|
T

P
x
G

L
x
V

G

G

M
|
M

H

K

-

P

-
x
F

V

E

G

G

D

E

P

T

M

L

P

L

F

P

A

S

L

A

E

D

G

M

V

L

R

R

R

P

D

E

A

L

I

I

V

V

A

S

D

D

C
x
V

G

V

M
x
Y

K

K

I

P

E

T

M

K

S

T

Q

R

L

L

V

E

Q

I

A

A

Q

E

A

E

L

Q

G

G

C

C

R

Q

I

T

Q

L

K

N

G
|
G

K

L

E

G

M
|
M

L
x
M

I

L

E

W

Q

Q

A

G

P

A

L

K

Y

A

L

F

E

E

L

I

F

W

G

T

W

H

P

K

G

E

V

M

S

P

A

V

D

D

D

Y

F

I

R

K

A

E

L

I

binding nicotinamide-adenine-dinucleotide: G137 (= G138), A138 (≠ T139), G139 (= G140), G140 (= G141), A141 (≠ V142), N161 (vs. gap), R162 (vs. gap), D164 (= D162), F166 (≠ N164), T210 (= T201), G211 (≠ P202), V212 (≠ L203), M214 (= M205), F217 (vs. gap), V238 (≠ C227), Y240 (≠ M229), G261 (= G250), M264 (= M253), M265 (≠ L254)

Q8Y9N5 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
26% identity, 98% coverage: 4:278/281 of query aligns to 9:289/291 of Q8Y9N5

query
sites
Q8Y9N5

I

I

T

T

G

G

T

H

T

T

R

E

I

L

F

I

P

G

V

L

I

I

G

A

W

T

P

P

V

I

E

R

Q

H

V
x
S

K
x
L

A
x
S

P

P

T

T

L

M

F

H

N

N

A

E

Y

A

F

F

E

A

H

K

H

L

G

G

I

L

D

D

A

Y

R

V

V

Y

I

L

P

A

F

F

K

E

I

V

E

G

P

D

E

K

R

E

Y

L

C

K

E

D

A

V

V

V

R

Q

M

G

F

F

M

-

K

R

T

A

E

M

N

N

V

L

G

R

G

G

I

W

F

N

V

V

S

S

I

M

P

P

H

N

K

K

P

T

M

N

T

I

L

H

E

K

A

Y

V

L

E

D

Q

K

S

L

T

S

L

P

R

A

A

A

R

E

V

L

A

V

G

G

A

A

C

V

N

N

A

T

V

V

Y

V

R

N

D

D

A

-

D

D

G

G

V

V

I

L

W

T

G

G

D

H

L

I

I

T

D

D

G

G

E

T

G

G

F

Y

I

M

R

R

A

A

L

L

A

K

R

E

T

A

A

G

A

H

D

D

R

I

P

I

L

-

V

-

W

-

N

-

Q

G

T

K

R

K

A

M

L

T

V

I

V

C

G

G

T

A

G

G

V

A

G

A

C

T

A

A

I

I

V

C

A

I

S

Q

L

A

A

A

A

L

Q

D

G

G

V

V

A

K

E

E

I

I

S

S

V

I

F

F

-
x
N

-
x
R

-
x
K

D
|
D

T

D

N

F

R

Y

A

A

G

N

A

A

E

E

A

K

L

T

L

V

A

E

R

K

A

I

A

N

A

S

A

K

F

T

P

D

A

C

T

K

R

A

V

Q

G

L

F

F

A

D

Q

I

P

E

D

D

A

H

S

E

G

Q

F

L

D

R

-

K

-

E

-

I

-

A

-

E

-

S

-

V

L

I

L

F

V

T

N

N

C

A

T

T

P

G

L

V

G

G

M
|
M

H

K

-

P

-

F

V

E

G

G

D

E

P

T

M

L

P

L

F

P

A

S

L

A

E

D

G

M

V

L

R

R

R

P

D

E

A

L

I

I

V

V

A

S

D

D

C

V

G

V

M

Y

K

K

I

P

E

T

M

K

S

T

Q

R

L

L

V

E

Q

I

A

A

Q

E

A

E

L

Q

G

G

C

C

R

Q

I

T

Q

L

K

N

G

G

K

L

E

G

M

M

L

M

I

L

E

W

Q

Q

A

G

P

A

L

K

Y

A

L

F

E

E

L

I

F

W

G

T

W

H

P

K

G

E

V

M

S

P

A

V

D

D

D

Y

F

I

R

K

A

E

L

I

SLS 26:28 (≠ VKA 21:23) binding shikimate
NRKD 161:164 (≠ ---D 162) binding NAD(+)
M214 (= M205) binding NADP(+)

1npdB X-ray structure of shikimate dehydrogenase complexed with NAD+ from e.Coli (ydib) northeast structural genomics research consortium (nesg) target er24 (see paper)
28% identity, 95% coverage: 4:269/281 of query aligns to 3:272/288 of 1npdB

query
sites
1npdB

I

V

T

T

G

A

T

K

T

Y

R

E

I

L

F

I

P

G

V

L

I

M

G

A

W

Y

P

P

V

I

E

R

Q

H

V

S

K

L

A

S

P

P

T

E

L

M

F

Q

N

N

A

K

Y

A

F

L

E

E

H

K

H

A

G

G

I

L

D

P

A

F

R

T

V

Y

I

M

P

A

F

F

K

E

I

V

E

D

P

N

E

D

R

S

Y

F

C

P

E

G

A

A

V

I

R

E

M

G

F

-

M

L

K

K

T

A

E

L

N

K

V

M

G

R

G

G

I

T

F

G

V

V

S

S

I

M

P

P

H

N

K

K

P

Q

M

L

T

A

L

C

E

E

A

Y

V

V

E

D

Q

E

S

L

T

T

L

P

R

A

A

A

R

K

V

L

A

V

G

G

A

A

C

I

N

N

A

T

V

I

Y

V

R

N

D

D

A

-

D

D

G

G

V

Y

I

L

W

R

G

G

D

Y

L

N

I

T

D

D

G

G

E

T

G

G

F

H

I

I

R

R

A

A

L

I

A

K

R

E

T

S

A

G

A

F

D

D

R

-

P

-

L

-

V

I

W

K

N

G

Q

K

T

T

R

M

A

V

L

L

V

L

V

-

G

G

T
x
A

G
|
G

V
x
A

G

S

C

T

A

A

I

I

V

G

A

A

S

Q

L

G

A

A

A

I

Q

E

G

G

V

L

A

K

E

E

I

I

S

K

V

L

F

F

D
x
N

T
x
R

N

R

R
x
D

A

E

G
x
F

A

F

E

D

A

K

L

A

L

L

A

A

R

F

A

A

A

Q

A

R

A

V

F

N

P

E

A

N

T

T

-

D

-

C

-

V

-

T

-

V

-

T

-

D

-

L

-

A

-

D

R

Q

V

Q

G

A

F

F

A

A

Q

E

P

A

D

L

A

A

S

S

G

A

F

-

D

D

L

I

L

L

V

T

N

N

C

G

T
|
T

P
x
K

L
x
V

G

G

M
|
M

H

K

V

-

G

-

D

-

P

-

M

-

P

P

F

L

A

E

L

N

E

E

G

S

V

L

R

V

R

N

D

D

A

I

-

S

-

L

-

H

-

P

-

G

-

L

I

L

V

V

A

T

D

E

C
|
C

G

V

M

Y

K

N

I

P

E

H

M

M

S

T

Q

K

L

L

V

Q

Q

Q

A

A

Q

Q

A

Q

L

A

G

G

C

C

R

K

I

T

Q

I

K

D

G

G

K

Y

E

G

M
|
M

L
|
L

I

L

E

W

Q

Q

A

G

P

A

L

E

Y

Q

L

F

E

T

L

L

F

-

G

-

W

W

P

T

G

G

binding nicotinamide-adenine-dinucleotide: A132 (≠ T139), G133 (= G140), G134 (= G141), A135 (≠ V142), N155 (≠ D162), R156 (≠ T163), D158 (≠ R165), F160 (≠ G167), T204 (= T201), K205 (≠ P202), V206 (≠ L203), M208 (= M205), C232 (= C227), M258 (= M253), L259 (= L254)

P0A6D5 Quinate/shikimate dehydrogenase; NAD-dependent shikimate 5-dehydrogenase; EC 1.1.1.282 from Escherichia coli (strain K12) (see 4 papers)
28% identity, 95% coverage: 4:269/281 of query aligns to 3:272/288 of P0A6D5

query
sites
P0A6D5

I

V

T

T

G

A

T

K

T

Y

R

E

I

L

F

I

P

G

V

L

I

M

G

A

W

Y

P

P

V

I

E

R

Q

H

V

S

K

L

A
x
S

P

P

T

E

L

M

F

Q

N

N

A

K

Y

A

F

L

E

E

H

K

H

A

G

G

I

L

D

P

A

F

R

T

V
x
Y

I

M

P

A

F

F

K

E

I

V

E

D

P

N

E

D

R

S

Y

F

C

P

E

G

A

A

V

I

R

E

M

G

F

-

M

L

K

K

T

A

E

L

N

K

V

M

G

R

G

G

I

T

F

G

V

V

S
|
S

I

M

P

P

H

N

K
|
K

P

Q

M

L

T

A

L

C

E

E

A

Y

V

V

E

D

Q

E

S

L

T

T

L

P

R

A

A

A

R

K

V

L

A

V

G

G

A

A

C

I

N
|
N

A

T

V

I

Y

V

R

N

D

D

A

-

D

D

G

G

V

Y

I

L

W

R

G

G

D

Y

L

N

I
x
T

D
|
D

G

G

E

T

G

G

F

H

I

I

R

R

A

A

L

I

A

K

R

E

T

S

A

G

A

F

D

D

R

-

P

-

L

-

V

I

W

K

N

G

Q

K

T

T

R

M

A

V

L

L

V

L

V

-

G

G

T
x
A

G
|
G

V
x
A

G

S

C

T

A

A

I

I

V

G

A

A

S

Q

L

G

A

A

A

I

Q

E

G

G

V

L

A

K

E

E

I

I

S

K

V

L

F

F

D
x
N

T
x
R

N
x
R

R
x
D

A

E

G

F

A

F

E

D

A

K

L

A

L

L

A

A

R

F

A

A

A

Q

A

R

A

V

F

N

P

E

A

N

T

T

-

D

-

C

-

V

-

T

-

V

-

T

-

D

-

L

-

A

-

D

R

Q

V

Q

G

A

F

F

A

A

Q

E

P

A

D

L

A

A

S

S

G

A

F

-

D

D

L

I

L

L

V

T

N

N

C

G

T

T

P
x
K

L

V

G

G

M

M

H

K

V

-

G

-

D

-

P

-

M

-

P

P

F

L

A

E

L

N

E

E

G

S

V

L

R

V

R

N

D

D

A

I

-

S

-

L

-

H

-

P

-

G

-

L

I

L

V

V

A

T

D

E

C
|
C

G
x
V

M
x
Y

K
x
N

I

P

E

H

M

M

S

T

Q

K

L

L

V

Q

Q

Q

A

A

Q

Q

A

Q

L

A

G

G

C

C

R

K

I

T

Q

I

K

D

G
|
G

K

Y

E

G

M

M

L

L

I

L

E

W

Q
|
Q

A

G

P

A

L

E

Y

Q

L

F

E

T

L

L

F

-

G

-

W

W

P

T

G

G

S22 (≠ A23) mutation to A: Kinetically unchanged as compared with the wild-type.
Y39 (≠ V40) mutation to F: Kinetically unchanged as compared with the wild-type.
S67 (= S69) mutation to A: Reduces activity towards quinate about 6-fold, but has a little effect on shikimate conversion.
K71 (= K73) mutation to A: 3200-fold decrease in the affinity for quinate. 170-fold decrease in the affinity for shikimate.; mutation to G: 10-fold greater reduction in catalytic efficiency is observed with quinate than with shikimate.
N92 (= N94) mutation to A: Alters protein structure. Loss of activity for both substrates.
T106 (≠ I109) mutation to A: 2000-fold decrease in the affinity for quinate. 70-fold decrease in the affinity for shikimate. 10-fold greater reduction in catalytic efficiency is observed with quinate than with shikimate.
D107 (= D110) mutation to A: Loss of activity towards quinate. 20000-fold decrease in the affinity for shikimate.
AGGA 132:135 (≠ TGGV 139:142) binding NAD(+)
NRRD 155:158 (≠ DTNR 162:165) binding NAD(+)
K205 (≠ P202) binding NAD(+)
CVYN 232:235 (≠ CGMK 227:230) binding NAD(+)
G255 (= G250) binding NAD(+)
Q262 (= Q257) mutation to A: 3-fold reduction in catalytic efficiency for both substrates.

Sites not aligning to the query:

1 modified: Initiator methionine, Removed

1o9bA Quinate/shikimate dehydrogenase ydib complexed with nadh (see paper)
28% identity, 93% coverage: 9:269/281 of query aligns to 2:266/280 of 1o9bA

query
sites
1o9bA

R

E

I

L

F

I

P

G

V

L

I

M

G

A

W

Y

P

P

V

I

E

R

Q

H

V

S

K

L

A

S

P

P

T

E

L

M

F

Q

N

N

A

K

Y

A

F

L

E

E

H

K

H

A

G

G

I

L

D

P

A

F

R

T

V

Y

I

M

P

A

F

F

K

E

I

V

E

D

P

N

E

D

R

S

Y

F

C

P

E

G

A

A

V

I

R

E

M

G

F

-

M

L

K

K

T

A

E

L

N

K

V

M

G

R

G

G

I

T

F

G

V

V

S

S

I

M

P

P

H

N

K

K

P

Q

M

L

T

A

L

C

E

E

A

Y

V

V

E

D

Q

E

S

L

T

T

L

P

R

A

A

A

R

K

V

L

A

V

G

G

A

A

C

I

N

N

A

T

V

I

Y

V

R

N

D

D

A

-

D

D

G

G

V

Y

I

L

W

R

G

G

D

Y

L

N

I

T

D

D

G

G

E

T

G

G

F

H

I

I

R

R

A

A

L

I

A

K

R

E

T

S

A

G

A

F

D

D

R

-

P

-

L

-

V

I

W

K

N

G

Q

K

T

T

R

M

A

V

L

L

V

L

V

-

G

G

T
x
A

G
|
G

V
x
A

G

S

C

T

A

A

I

I

V

G

A

A

S

Q

L

G

A

A

A

I

Q

E

G

G

V

L

A

K

E

E

I

I

S

K

V

L

F

F

D

N

T
x
R

N

R

R

D

A

E

G
x
F

A

F

E

D

A

K

L

A

L

L

A

A

R

F

A

A

A

Q

A

R

A

V

F

N

P

E

A

N

T

T

-

D

-

C

-

V

-

T

-

V

-

T

-

D

-

L

-

A

-

D

R

Q

V

Q

G

A

F

F

A

A

Q

E

P

A

D

L

A

A

S

S

G

A

F

-

D

D

L

I

L

L

V

T

N

N

C

G

T

T

P
x
K

L
x
V

G

G

M
|
M

H

K

V

-

G

-

D

-

P

-

M

-

P

P

F

L

A

E

L

N

E

E

G

S

V

L

R

V

R

N

D

D

-

I

-

S

-

L

-

H

-

P

-

G

A

L

I

L

V

V

A

T

D

E

C
|
C

G

V

M
x
Y

K

N

I

P

E

H

M

M

S

T

Q

K

L

L

V

Q

Q

Q

A

A

Q

Q

A

Q

L

A

G

G

C

C

R

K

I

T

Q

I

K

D

G

G

K

Y

E

G

M
|
M

L
|
L

I

L

E

W

Q

Q

A

G

P

A

L

E

Y

Q

L

F

E

T

L

L

F

-

G

-

W

W

P

T

G

G

binding 1,4-dihydronicotinamide adenine dinucleotide: A126 (≠ T139), G127 (= G140), G128 (= G141), A129 (≠ V142), R150 (≠ T163), F154 (≠ G167), K199 (≠ P202), V200 (≠ L203), M202 (= M205), C226 (= C227), Y228 (≠ M229), M252 (= M253), L253 (= L254)

7colA Crystal structure of 5-ketofructose reductase complexed with NADPH (see paper)
29% identity, 88% coverage: 26:273/281 of query aligns to 23:266/280 of 7colA

query
sites
7colA

L

M

F

V

N

E

A

A

Y

G

F

Y

E

H

H

H

H

A

G

G

I

L

D

D

A

A

R

R

V

Y

I

I

P

N

F

C

K

D

I

V

E

K

P

A

E

S

R

G

Y

L

C

A

E

D

A

A

V

V

R

K

M

G

F

A

M

K

K

A

T

M

E

E

N

W

V

V

G

G

G

-

I

F

F

N

V

C

S

S

I

L

P

P

H

H

K

K

P

V

M

A

T

V

L

L

E

D

A

H

V

L

E

D

Q

D

S

I

T

A

L

E

R

S

A

A

R

R

V

L

A

I

G

G

A

A

C

V

N

N

A

C

V

V

Y

A

R

I

D

R

A

-

D

E

G

G

V

K

I

L

W

I

G

G

D

H

L

N

I

T

D

D

G

G

E

K

G

G

F

F

I

L

R

A

A

S

L

L

A

K

R

T

T

V

A

T

A

S

D

P

R

A

P

-

L

-

V

-

W

-

N

-

Q

G

T

K

R

R

A

V

L

V

V

I

V

L

G
|
G

T

A

G
|
G

V
x
A

G

A

C

R

A

A

I

I

V

A

A

V

S

E

L

L

A

A

A

L

Q

A

G

G

V

A

A

A

E

H

I

I

S

T

V

I

F

V

D
x
N

T
x
R

N

D

R

A

A

S

G
x
K

A

A

E

E

A

T

L

I

L

A

A

A

-

L

-

I

-

N

-

D

-

K

-

T

R

E

A

A

A

T

A

G

A

E

F

A

P

Q

A

A

T

W

R

S

V

G

G

K

F

F

A

S

Q

L

P

P

D

-

A

-

S

T

G

G

F

T

D

D

L

I

L

L

V

I

N

N

C

A

T
|
T

P
x
S

L
x
I

G

G

M

L

H

-

V

-

G

G

D

D

P

P

M

N

-

A

-

P

P

P

F

V

A

E

L

M

E

G

G

S

V

L

R

T

R

K

D

E

A

T

I

V

V

V

A

A

D

D

C
x
V

G

I

M

P

K

N

I

P

E

P

M

Q

S

T

Q

R

L

F

L

L

V

K

Q

D

A

A

Q

K

A

A

L

L

G

G

C

C

R

T

I

T

Q

L

K

D

G

G

K

L

E

G

M

M

L

L

I

V

E

N

Q
|
Q

A

G

P

V

L

I

Y

G

L

V

E

E

L

I

F

-

G

-

W

W

P

L

G

G

V

R

S

T

A

L

D

D

binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: G128 (= G138), G130 (= G140), G131 (= G141), A132 (≠ V142), N152 (≠ D162), R153 (≠ T163), K157 (≠ G167), T195 (= T201), S196 (≠ P202), I197 (≠ L203), V222 (≠ C227), Q252 (= Q257)

Q8ZPR4 Quinate/shikimate dehydrogenase; NAD-dependent shikimate 5-dehydrogenase; EC 1.1.1.282 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
27% identity, 95% coverage: 4:269/281 of query aligns to 3:272/288 of Q8ZPR4

query
sites
Q8ZPR4

I

V

T

T

G

A

T

K

T

Y

R

E

I

L

F

I

P

G

V

L

I

M

G

A

W

Y

P

P

V

I

E

R

Q

H

V

S

K

L

A

S

P

P

T

E

L

M

F

Q

N

N

A

K

Y

A

F

L

E

E

H

K

H

A

G

G

I

L

D

P

A

Y

R

T

V

Y

I

M

P

A

F

F

K

E

I

V

E

D

P

N

E

T

R

T

Y

F

C

A

E

S

A

A

V

I

R

E

M

G

F

-

M

L

K

K

T

A

E

L

N

K

V

M

G

R

G

G

I

T

F

G

V

V

S

S

I

M

P

P

H

N

K

K

P

Q

M

L

T

A

L

C

E

E

A

Y

V

V

E

D

Q

E

S

L

T

T

L

P

R

A

A

A

R

K

V

L

A

V

G

G

A

A

C

I

N

N

A

T

V

I

Y

V

R

N

D

D

A

-

D

D

G

G

V

Y

I

L

W

R

G

G

D

Y

L

N

I

T

D

D

G

G

E

T

G

G

F

H

I

I

R

R

A

A

L

I

A

K

R

E

T

S

A

G

A

F

D

D

R

-

P

-

L

-

V

M

W

R

N

G

Q

K

T

T

R

M

A

V

L

L

V

L

V

G

G
x
A

T
x
G

G
|
G

G
x
A

V

A

G

-

C

T

A

A

I

I

V

G

A

A

S

Q

L

A

A

A

A

I

Q

E

G

G

V

I

A

K

E

E

I

I

S

K

V

L

F

F

D
x
N

T
x
R

N
x
K

R
x
D

A

D

G

F

A

F

E

E

A

K

L

A

L

V

A

A

R

F

A

A

A

K

A

R

A

V

F

N

P

E

A

N

T

T

-

D

-

C

-

V

-

T

-

V

-

T

-

D

-

L

-

A

-

D

R

Q

V

H

G

A

F

F

A

T

Q

E

P

A

D

L

A

A

S

S

G

A

F

-

D

D

L

I

L

L

V

T

N

N

C

G

T

T

P
x
K

L

V

G

G

M

M

H

K

-

P

-

L

-

E

-

N

-

E

-

S

-

L

V

I

G

G

D

D

P

-

M

-

P

-

F

-

A

-

L

V

E

S

G

L

V

L

R

R

R

P

D

E

A

L

I

L

V

V

A

T

D

E

C
|
C

G
x
V

M
x
Y

K
x
N

I

P

E

H

M

M

S

T

Q

K

L

L

V

Q

Q

Q

A

A

Q

Q

A

Q

L

A

G

G

C

C

R

K

I

T

Q

I

K

D

G
|
G

K

Y

E

G

M

M

L

L

I

L

E

W

Q

Q

A

G

P

A

L

E

Y

Q

L

F

E

E

L

L

F

-

G

-

W

W

P

T

G

G

AGGA 132:135 (≠ GTGG 138:141) binding NAD(+)
NRKD 155:158 (≠ DTNR 162:165) binding NAD(+)
K205 (≠ P202) binding NAD(+)
CVYN 232:235 (≠ CGMK 227:230) binding NAD(+)
G255 (= G250) binding NAD(+)

Q58484 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
27% identity, 95% coverage: 4:271/281 of query aligns to 2:266/282 of Q58484

query
sites
Q58484

I

I

T

N

G

A

T

K

T

T

R

K

I

V

F

I

P

G

V

L

I

I

G

G

W

H

P

P

V

V

E

E

Q

H

V

S

K

F

A

S

P

P

T

I

L

M

F

H

N

N

A

A

Y

A

F

F

E

K

H

D

H

K

G

G

I

L

D

N

A

Y

R

V

V

Y

I

V

P

A

F

F

K

D

I

V

E

L

P

P

E

E

R

N

Y

-

C

L

E

K

A

Y

V

V

R

I

M

D

F

G

M

A

K

K

T

A

E

L

N

G

V

I

G

V

G

G

I

F

F

N

V

V

S

T

I

I

P

P

H

H

K

K

P

I

M

E

T

I

L

M

E

K

A

Y

V

L

E

D

Q

E

S

I

T

D

L

K

R

D

A

A

R

Q

V

L

A

I

G

G

A

A

C

V

N

N

A

T

V

I

Y

-

R

K

D

I

A

E

D

D

G

G

V

K

I

A

W

I

G

G

D

Y

L

N

I

T

D

D

G

G

E

I

G

G

F

-

I

-

R

-

A

-

L

-

A

A

R

R

T

M

A

A

A

L

D

E

R

E

P

E

L

I

V

G

W

R

N

V

Q

K

T

D

R

K

A

N

L

I

V

V

V

I

G

Y

T
x
G

G
x
A

G
|
G

V
x
G

G
x
A

C

A

A

R

I

A

V

V

A

A

S

F

L

E

A

L

A

A

Q

K

G

D

V

-

A

N

E

N

I

I

S

I

V

I

F

A

D
x
N

T
x
R

N
x
T

R
x
V

A
x
E

G
x
K

A

A

E

E

A

A

L

L

L

A

A

K

R

E

A

I

A

A

A

E

A

K

F

L

P

N

A

K

T

K

-

F

-

G

-

E

R

E

V

V

G

K

F

F

A

S

-

G

-

L

Q

D

P

V

D

D

A

L

S

D

G

G

F

V

D

D

L

I

V

I

N

N

C

A

T
|
T

P

P

L

I

G

G

M
|
M

H

Y

V

P

G

N

-

I

D

D

P

V

M

E

P

P

F

I

A

V

-

K

L

A

E

E

G

K

V

L

R

R

R

E

D

D

A

M

I

V

V

V

A

M

D

D

C
x
L

G

I

M

Y

K

N

I

P

E

L

M

E

S

T

Q

V

L

L

V

K

Q

E

A

A

Q

K

A

K

L

V

G

N

C

A

R

K

I

T

Q

I

K

N

G

G

K

L

E

G

M

M

L

L

I

I

E

Y

Q

Q

A

G

P

A

L

V

Y

A

L

F

E

K

L

I

F

-

G

-

W

W

P

T

G

G

V

V

S

E

GAGGA 130:134 (≠ TGGVG 139:143) binding NADP(+)
NRTVEK 152:157 (≠ DTNRAG 162:167) binding NADP(+)
T196 (= T201) binding NADP(+)
M200 (= M205) binding NADP(+)
L224 (≠ C227) binding NADP(+)

1nvtB Crystal structure of shikimate dehydrogenase (aroe or mj1084) in complex with NADP+ (see paper)
27% identity, 95% coverage: 4:271/281 of query aligns to 7:271/287 of 1nvtB

query
sites
1nvtB

I

I

T

N

G

A

T

K

T

T

R

K

I

V

F

I

P

G

V

L

I

I

G

G

W

H

P

P

V

V

E
|
E

Q
x
H

V

S

K

F

A

S

P

P

T

I

L

M

F

H

N

N

A

A

Y

A

F

F

E

K

H

D

H

K

G

G

I

L

D

N

A

Y

R

V

V

Y

I

V

P

A

F

F

K

D

I

V

E

L

P

P

E

E

R

N

Y

-

C

L

E

K

A

Y

V

V

R

I

M

D

F

G

M

A

K

K

T

A

E

L

N

G

V

I

G

V

G

G

I

F

F

N

V

V

S

T

I
|
I

P

P

H

H

K
|
K

P

I

M

E

T

I

L

M

E

K

A

Y

V

L

E

D

Q

E

S

I

T

D

L

K

R

D

A

A

R

Q

V

L

A

I

G

G

A

A

C

V

N

N

A

T

V

I

Y

-

R

K

D

I

A

E

D

D

G

G

V

K

I

A

W

I

G

G

D

Y

L

N

I

T

D
|
D

G

G

E

I

G

G

F

-

I

-

R

-

A

-

L

-

A

A

R

R

T

M

A

A

A

L

D

E

R

E

P

E

L

I

V

G

W

R

N

V

Q

K

T

D

R

K

A

N

L

I

V

V

V

I

G

Y

T
x
G

G

A

G
|
G

V
x
G

G
x
A

C

A

A

R

I

A

V

V

A

A

S

F

L

E

A

L

A

A

Q

K

G

D

V

-

A

N

E

N

I

I

S

I

V

I

F

A

D
x
N

T
x
R

N
x
T

R

V

A

E

G
x
K

A

A

E

E

A

A

L

L

L

A

A

K

R

E

A

I

A

A

A

E

A

K

F

L

P

N

A

K

T

K

-

F

-

G

-

E

R

E

V

V

G

K

F

F

A

S

-

G

-

L

Q

D

P

V

D

D

A

L

S

D

G

G

F

V

D

D

L

I

V

I

N

N

C
x
A

T
|
T

P
|
P

L
x
I

G

G

M
|
M

H

Y

V

P

G

N

-

I

D

D

P

V

M

E

P

P

F

I

A

V

-

K

L

A

E

E

G

K

V

L

R

R

R

E

D

D

A

M

I

V

V

V

A

M

D

D

C
x
L

G

I

M
x
Y

K

N

I

P

E

L

M

E

S

T

Q

V

L

L

V

K

Q

E

A

A

Q

K

A

K

L

V

G

N

C

A

R

K

I

T

Q

I

K

N

G

G

K

L

E

G

M
|
M

L
|
L

I

I

E

Y

Q

Q

A

G

P

A

L

V

Y

A

L

F

E

K

L

I

F

-

G

-

W

W

P

T

G

G

V

V

S

E

active site: K75 (= K73), D111 (= D110)
binding nadp nicotinamide-adenine-dinucleotide phosphate: I72 (= I70), G135 (≠ T139), G137 (= G141), G138 (≠ V142), A139 (≠ G143), N157 (≠ D162), R158 (≠ T163), T159 (≠ N164), K162 (≠ G167), A200 (≠ C200), T201 (= T201), P202 (= P202), I203 (≠ L203), M205 (= M205), L229 (≠ C227), Y231 (≠ M229), M255 (= M253), L256 (= L254)
binding zinc ion: E22 (= E19), H23 (≠ Q20)

1nvtA Crystal structure of shikimate dehydrogenase (aroe or mj1084) in complex with NADP+ (see paper)
27% identity, 95% coverage: 4:271/281 of query aligns to 7:271/287 of 1nvtA

query
sites
1nvtA

I

I

T

N

G

A

T

K

T

T

R

K

I

V

F

I

P

G

V

L

I

I

G

G

W

H

P

P

V

V

E

E

Q

H

V

S

K

F

A

S

P

P

T

I

L

M

F

H

N

N

A

A

Y

A

F

F

E

K

H

D

H

K

G

G

I

L

D

N

A

Y

R

V

V

Y

I

V

P

A

F

F

K

D

I

V

E

L

P

P

E

E

R

N

Y

-

C

L

E

K

A

Y

V

V

R

I

M

D

F

G

M

A

K

K

T

A

E

L

N

G

V

I

G

V

G

G

I

F

F

N

V

V

S

T

I

I

P

P

H

H

K
|
K

P

I

M

E

T

I

L

M

E

K

A

Y

V

L

E

D

Q

E

S

I

T

D

L

K

R

D

A

A

R

Q

V

L

A

I

G

G

A

A

C

V

N

N

A

T

V

I

Y

-

R

K

D

I

A

E

D

D

G

G

V

K

I

A

W

I

G

G

D

Y

L

N

I

T

D
|
D

G

G

E

I

G

G

F

-

I

-

R

-

A

-

L

-

A

A

R

R

T

M

A

A

A

L

D

E

R

E

P

E

L

I

V

G

W

R

N

V

Q

K

T

D

R

K

A

N

L

I

V

V

V

I

G

Y

T
x
G

G

A

G

G

V

G

G
x
A

C

A

A

R

I

A

V

V

A

A

S

F

L

E

A

L

A

A

Q

K

G

D

V

-

A

N

E

N

I

I

S

I

V

I

F

A

D
x
N

T
x
R

N
x
T

R

V

A

E

G
x
K

A

A

E

E

A

A

L

L

L

A

A

K

R

E

A

I

A

A

A

E

A

K

F

L

P

N

A

K

T

K

-

F

-

G

-

E

R

E

V

V

G

K

F

F

A

S

-

G

-

L

Q

D

P

V

D

D

A

L

S

D

G

G

F

V

D

D

L

I

V

I

N

N

C
x
A

T
|
T

P
|
P

L
x
I

G

G

M
|
M

H

Y

V

P

G

N

-

I

D

D

P

V

M

E

P

P

F

I

A

V

-

K

L

A

E

E

G

K

V

L

R

R

R

E

D

D

A

M

I

V

V

V

A

M

D

D

C
x
L

G

I

M
x
Y

K

N

I

P

E

L

M

E

S

T

Q

V

L

L

V

K

Q

E

A

A

Q

K

A

K

L

V

G

N

C

A

R

K

I

T

Q

I

K

N

G
|
G

K

L

E

G

M
|
M

L
|
L

I

I

E

Y

Q

Q

A

G

P

A

L

V

Y

A

L

F

E

K

L

I

F

-

G

-

W

W

P

T

G

G

V

V

S

E

active site: K75 (= K73), D111 (= D110)
binding nadp nicotinamide-adenine-dinucleotide phosphate: G135 (≠ T139), A139 (≠ G143), N157 (≠ D162), R158 (≠ T163), T159 (≠ N164), K162 (≠ G167), A200 (≠ C200), T201 (= T201), P202 (= P202), I203 (≠ L203), M205 (= M205), L229 (≠ C227), Y231 (≠ M229), G252 (= G250), M255 (= M253), L256 (= L254)

P56119 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
26% identity, 92% coverage: 9:266/281 of query aligns to 4:246/263 of P56119

query
sites
P56119

R

K

I

S

F

F

P

G

V

V

I

F

G

G

W

N

P

P

V

I

E

K

Q

H

V
x
S

K
|
K

A
x
S

P

P

T

L

L

I

F

H

N

N

A

A

Y

C

F

F

E

L

H

T

H

F

G

Q

I

K

D

E

A

L

R

R

V

F

I

L

-

G

-

H

-

Y

-

H

P

P

F

I

K

L

I

L

E

P

P

L

E

E

R

S

Y

H

C

I

E

K

A

S

V

E

R

F

M

L

F

H

M

L

K

-

T

-

E

-

N

G

V

L

G

S

G

G

I

A

F

N

V

V

S
x
T

I

L

P

P

H

F

K

K

P

E

M

R

T

A

L

F

E

Q

A

V

V

C

E

D

Q

K

S

I

T

K

L

G

R

I

A

A

R

L

V

E

A

C

G

G

A

A

C

V

N
|
N

A

T

V

L

Y

V

R

L

D

E

A

N

D

D

G

E

V

L

I

V

W

-

G

G

D

Y

L

N

I

T

D
|
D

G

A

E

L

G

G

F

F

I

Y

R

L

A

S

L

L

A

K

R

Q

T

K

A

-

D

-

R

-

P

-

L

-

V

-

W

-

N

N

Q

Y

T

Q

R

N

A

A

L

L

V

I

V

L

G
|
G

T
x
A

G
|
G

V
x
S

G

A

C

K

A

A

I

L

V

A

A

C

S

E

L

L

A

K

Q

Q

G

G

V

L

A

-

E

Q

I

V

S

S

V

V

F

L

D

N

T

R

N

S

R

S

A

R

G

G

A

L

E

D

A

F

L

F

L

-

A

-

R

-

A

-

F

-

P

-

A

-

T

Q

R

R

V

L

G

G

-

C

-

D

-

C

F

F

A

M

Q

E

P

P

D

P

A

K

S

S

G

A

F

F

D

D

L

L

L

I