Comparing HSERO_RS20055 FitnessBrowser__HerbieS:HSERO_RS20055 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
36% identity, 42% coverage: 345:594/597 of query aligns to 4:253/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
36% identity, 42% coverage: 345:594/597 of query aligns to 4:253/253 of 1g9xB
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
34% identity, 42% coverage: 345:594/597 of query aligns to 6:238/240 of 1ji0A
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
31% identity, 42% coverage: 345:594/597 of query aligns to 2:235/240 of 6mjpA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
33% identity, 41% coverage: 353:594/597 of query aligns to 10:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
33% identity, 41% coverage: 353:594/597 of query aligns to 10:235/238 of 6s8gA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
33% identity, 41% coverage: 353:594/597 of query aligns to 10:235/235 of 6mhzA
6mbnA Lptb e163q in complex with atp (see paper)
33% identity, 41% coverage: 353:594/597 of query aligns to 11:236/241 of 6mbnA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
33% identity, 40% coverage: 353:593/597 of query aligns to 10:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
33% identity, 40% coverage: 353:593/597 of query aligns to 10:234/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
33% identity, 40% coverage: 353:592/597 of query aligns to 10:233/233 of 6b8bA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
33% identity, 39% coverage: 348:582/597 of query aligns to 4:223/240 of 4ymuJ
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
31% identity, 41% coverage: 343:587/597 of query aligns to 15:240/378 of P69874
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
33% identity, 41% coverage: 344:587/597 of query aligns to 1:228/241 of 4u00A
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
28% identity, 42% coverage: 345:594/597 of query aligns to 4:239/501 of P04983
1vciA Crystal structure of the atp-binding cassette of multisugar transporter from pyrococcus horikoshii ot3 complexed with atp (see paper)
30% identity, 40% coverage: 346:586/597 of query aligns to 7:220/353 of 1vciA
3c4jA Abc protein artp in complex with atp-gamma-s
30% identity, 41% coverage: 345:586/597 of query aligns to 3:229/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
30% identity, 41% coverage: 345:586/597 of query aligns to 3:229/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
30% identity, 41% coverage: 345:586/597 of query aligns to 3:229/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
30% identity, 41% coverage: 345:586/597 of query aligns to 3:229/242 of 2oljA
>HSERO_RS20055 FitnessBrowser__HerbieS:HSERO_RS20055
MSMNKRIPLYALLVVLALFPLLPTPQFWVIQANYIGLYALVAIGLVLLTGIGGMTSFGQA
AFVGMGAYTTSYLTTVHGVSPWLTLPVGLFITGVSAYVLGRITLRMSGHYLPLATIAWGI
SLYFLFGKVDFLGKYDGISGIPALQLAGLDLAKERHLYYLIWAIVLAAAWVSLNLLDSRA
GRAIRALKGGRSMAEAMGVDTGRYKILIFVFAALLASVSGWLFAHMQRTVNPSPFSLAMG
IEYLFIVVVGGIAHIWGALLGAGVLKLLSDQLQVLLPALLGDGGSYESIVFGLILILLLK
YAGGGLWPWVRALWLRAFPTAPAPLRVAHATAMDKRAAVARGAPLLEVDQINKRFGGLVA
VNDVSFKVKAGEIVGLIGPNGAGKSTTFNLVTGLLHASGGRVGFNGRDIAGLPARAIARL
GIARTFQHVRLLPGMTVLENVALGAHMRSQQGFLKNTVNAMLHLERAEEQALLDEAARAL
HRVGLQHLMHEQAGNLALGQQRILEIARALCCDPLLLLLDEPAAGLRHLEKQALSKVLQE
LRADGMSILLVEHDMEFVMELTDHIVVMEFGAKIAEGTPQEIARHPAVIEAYLGGIE
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory