Comparing HSERO_RS20580 HSERO_RS20580 hypothetical protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
34% identity, 43% coverage: 334:583/586 of query aligns to 4:253/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
35% identity, 43% coverage: 334:583/586 of query aligns to 4:253/253 of 1g9xB
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
31% identity, 43% coverage: 332:585/586 of query aligns to 4:240/240 of 1ji0A
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
32% identity, 41% coverage: 342:583/586 of query aligns to 10:235/235 of 6mhzA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
32% identity, 41% coverage: 342:583/586 of query aligns to 10:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
32% identity, 41% coverage: 342:583/586 of query aligns to 10:235/238 of 6s8gA
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
30% identity, 45% coverage: 316:578/586 of query aligns to 11:242/378 of P69874
Sites not aligning to the query:
6mbnA Lptb e163q in complex with atp (see paper)
32% identity, 41% coverage: 342:583/586 of query aligns to 11:236/241 of 6mbnA
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
33% identity, 41% coverage: 332:572/586 of query aligns to 2:224/285 of 4yerA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
32% identity, 41% coverage: 342:582/586 of query aligns to 10:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
32% identity, 41% coverage: 342:582/586 of query aligns to 10:234/234 of 4p31A
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
30% identity, 41% coverage: 334:576/586 of query aligns to 2:228/241 of 4u00A
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
33% identity, 39% coverage: 349:577/586 of query aligns to 20:234/343 of P30750
Sites not aligning to the query:
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
30% identity, 40% coverage: 337:571/586 of query aligns to 4:223/240 of 4ymuJ
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
33% identity, 39% coverage: 349:577/586 of query aligns to 21:235/344 of 6cvlD
Sites not aligning to the query:
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
32% identity, 41% coverage: 342:581/586 of query aligns to 10:233/233 of 6b8bA
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
33% identity, 39% coverage: 349:577/586 of query aligns to 21:235/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
33% identity, 39% coverage: 349:577/586 of query aligns to 21:235/344 of 3tuiC
Sites not aligning to the query:
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
26% identity, 43% coverage: 332:583/586 of query aligns to 2:239/501 of P04983
P9WQI3 Trehalose import ATP-binding protein SugC; MtbSugC; Nucleotide-binding domain of SugABC transporter; NBD of SugABC transporter; SugABC transporter ATPase SugC; EC 7.5.2.- from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
31% identity, 42% coverage: 331:578/586 of query aligns to 2:229/393 of P9WQI3
>HSERO_RS20580 HSERO_RS20580 hypothetical protein
LPALFFAIVLALPQLGLPPFWVTLLSYVGLYAIVALGLVLLTGVAGLISFGQAAFVGMGA
YTTAYLTTQFGLSPWIGLLAGIALTACSAFLIGSLTMRISGHYLPLSTIAWGLSLYYLFG
NLEMLGKHDGINGIPVITIGSVEFGNGASMYLLIWVVLILALVSVVNFLDSRAGRAVRAL
RFGTVMPEAMGVDTARLKIVIFVYAAVLAGISGWLYAHLQQAVNPTPFGLKYGIDYLLMV
VVGGAGHVAGAILGAGLLAVLSNFLQEWLPGVLGTGGNFEAIVFGIALVIFLQFANEGLW
PRLQARFGRRRPRPLPADAAPLAQMAKPARGEVILDVEAARKQFGGLVAVNNVSFSVKAG
EIVGLIGPNGAGKSTTFNLVTGVLSVSSGKLLYRGQSLAGLSSRDISSRGIARTFQHVRL
VPGMSVLENAAMGAFRRGQFAPQRGILASLLRANRSEEARILSEARRQLERVGLGDLVDR
PAGSLALGQQRILEIARALCCDPALLLLDEPAAGLRLKEKEALAALLDKLRGEGMAVLLV
EHDMDFVMQLTDHIVVMEFGAKIAEGTPAQIQVHPAVLEAYLGGAQ
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory