Comparing HSERO_RS22460 HSERO_RS22460 xylose ABC transporter substrate-binding protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3ma0A Closed liganded crystal structure of xylose binding protein from escherichia coli (see paper)
62% identity, 91% coverage: 30:335/338 of query aligns to 1:307/313 of 3ma0A
4ywhA Crystal structure of an abc transporter solute binding protein (ipr025997) from actinobacillus succinogenes 130z (asuc_0499, target efi-511068) with bound d-xylose
62% identity, 91% coverage: 30:335/338 of query aligns to 2:308/310 of 4ywhA
3uugA Crystal structure of the periplasmic sugar binding protein chve (see paper)
39% identity, 89% coverage: 34:335/338 of query aligns to 5:328/329 of 3uugA
3urmA Crystal structure of the periplasmic sugar binding protein chve (see paper)
39% identity, 89% coverage: 34:335/338 of query aligns to 5:328/329 of 3urmA
4wwhA Crystal structure of an abc transporter solute binding protein (ipr025997) from mycobacterium smegmatis (msmeg_1704, target efi- 510967) with bound d-galactose
38% identity, 89% coverage: 34:335/338 of query aligns to 5:328/329 of 4wwhA
4ys6A Crystal structure of an abc transporter solute binding protein (ipr025997) from clostridium phytofermentans (cphy_1585, target efi- 511156) with bound beta-d-glucose
36% identity, 89% coverage: 34:335/338 of query aligns to 3:323/324 of 4ys6A
4rxuA Crystal structure of carbohydrate transporter solute binding protein caur_1924 from chloroflexus aurantiacus, target efi-511158, in complex with d-glucose
33% identity, 85% coverage: 45:331/338 of query aligns to 17:332/340 of 4rxuA
Sites not aligning to the query:
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
33% identity, 86% coverage: 34:322/338 of query aligns to 3:274/274 of 2ioyA
6s3tA P46, an immunodominant surface protein from mycoplasma hyopneumoniae (see paper)
29% identity, 86% coverage: 31:321/338 of query aligns to 12:371/374 of 6s3tA
6ruxA P46, an immunodominant surface protein from mycoplasma hyopneumoniae (see paper)
29% identity, 86% coverage: 31:321/338 of query aligns to 10:369/373 of 6ruxA
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
32% identity, 78% coverage: 32:294/338 of query aligns to 3:270/287 of 5dteB
4yo7A Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
29% identity, 73% coverage: 75:322/338 of query aligns to 50:281/287 of 4yo7A
Sites not aligning to the query:
4ry9B Crystal structure of carbohydrate transporter solute binding protein veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009, a complex with d-talitol
28% identity, 88% coverage: 33:330/338 of query aligns to 4:291/297 of 4ry9B
4ry9A Crystal structure of carbohydrate transporter solute binding protein veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009, a complex with d-talitol
28% identity, 88% coverage: 33:330/338 of query aligns to 4:291/297 of 4ry9A
A0QYB5 D-threitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
27% identity, 73% coverage: 5:252/338 of query aligns to 3:250/349 of A0QYB5
Sites not aligning to the query:
2x7xA Fructose binding periplasmic domain of hybrid two component system bt1754 (see paper)
32% identity, 54% coverage: 61:244/338 of query aligns to 31:207/301 of 2x7xA
Sites not aligning to the query:
4rxmB Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
29% identity, 69% coverage: 36:268/338 of query aligns to 7:238/288 of 4rxmB
Sites not aligning to the query:
4rxmA Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
29% identity, 69% coverage: 36:268/338 of query aligns to 9:240/291 of 4rxmA
Sites not aligning to the query:
A0QYB3 Xylitol-binding protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
28% identity, 68% coverage: 22:252/338 of query aligns to 25:250/349 of A0QYB3
Sites not aligning to the query:
5ibqA Crystal structure of an abc solute binding protein from rhizobium etli cfn 42 (rhe_pf00037,target efi-511357) in complex with alpha-d-apiose
32% identity, 72% coverage: 47:288/338 of query aligns to 11:251/287 of 5ibqA
>HSERO_RS22460 HSERO_RS22460 xylose ABC transporter substrate-binding protein
MKAMLKKTVLALMTVTTLSMVAGSAMADAKNPKIGFSIDDLRVERWARDRDFFTAAAEKL
GAKVYVQSADASEQRQISQIENLISRGVDVIVIVPFNATVLTNTIKEAKKAGIKVLSYDR
LILNADVDAYISFDNEKVGEMQAEGILKVKNKGNFFLLGGSPTDNNAKMFREGQMKALKP
YIDKGDIKIVGQQWVKEWNPTEALSIVENALTANNNKIDAIVASNDGTAGGAIQALAAQK
LAGKVPVSGQDADLAAVKRVVAGTQTMTVYKPLKQIATEAAKLSVELARNEKPTYNAQYD
NGFKKVDSLLLKPILLTKENVKVLVDDGFYTQAQIDGR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory