SitesBLAST
Comparing HSERO_RS22680 FitnessBrowser__HerbieS:HSERO_RS22680 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
P21310 Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see 4 papers)
36% identity, 99% coverage: 1:538/542 of query aligns to 1:506/510 of P21310
- M1 (= M1) modified: Initiator methionine, Removed
- S144 (= S147) modified: 2,3-didehydroalanine (Ser); mutation S->A,T: Complete loss of activity.; mutation to C: No effect.
P21213 Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Rattus norvegicus (Rat) (see paper)
35% identity, 97% coverage: 4:530/542 of query aligns to 114:612/657 of P21213
- S254 (= S147) mutation to A: Complete loss of activity.
1gkmA Histidine ammonia-lyase (hal) from pseudomonas putida inhibited with l-cysteine (see paper)
35% identity, 99% coverage: 2:538/542 of query aligns to 1:503/507 of 1gkmA
- active site: Y53 (= Y57), G60 (= G64), H83 (= H87), N193 (= N203), Y278 (= Y302), R281 (= R305), F327 (= F355), E412 (= E442)
- binding cysteine: G142 (= G148), L189 (≠ S199), N193 (= N203), F327 (= F355)
Q8GMG0 MIO-dependent tyrosine 2,3-aminomutase; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Streptomyces globisporus (see 3 papers)
37% identity, 95% coverage: 4:519/542 of query aligns to 13:515/539 of Q8GMG0
- Y63 (= Y57) active site, Proton donor/acceptor; mutation to F: Complete loss of activity. It does not affect the over-all structure of the enzyme.
- E71 (≠ L65) mutation to A: Despite a decrease in activity, it shows lyase activity over time and still produced some amount of beta-tyrosine.
- H93 (= H87) binding ; mutation to F: Complete loss of activity.
- A152 (= A146) modified: Crosslink with 154, 5-imidazolinone (Ala-Gly)
- S153 (= S147) modified: 2,3-didehydroalanine (Ser)
- G154 (= G148) modified: Crosslink with 152, 5-imidazolinone (Ala-Gly)
- N205 (= N203) binding
- Y303 (≠ R297) mutation to A: Despite a decrease in activity, it shows lyase activity over time and still produced some amount of beta-tyrosine.
- R311 (= R305) binding
- Y415 (≠ C414) mutation to V: Complete loss of activity.
Q0VZ68 Tyrosine 2,3-aminomutase; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Chondromyces crocatus (see paper)
34% identity, 96% coverage: 4:525/542 of query aligns to 1:509/531 of Q0VZ68
- F57 (≠ V63) mutation to Y: Loss of aminomutase activity.
- LVPVMI 60:65 (≠ LKDTRI 66:71) mutation to MIYMLV: Shift towards ammonia lyase activity.
- RSHA 79:82 (≠ RAHS 85:88) mutation to TFLS: Total loss of aminomutase activity.
- RSHAA 79:83 (≠ RAHSA 85:89) mutation to YHLAT: Total loss of aminomutase activity.
- G184 (≠ D192) mutation to R: Gain of aminomutase activity.
- K242 (≠ R252) mutation to R: Gain of aminomutase activity.
- 275:288 (vs. 287:296, 21% identical) mutation Missing: Total loss of aminomutase activity.
- P377 (= P388) mutation to R: No effect.
- C396 (≠ T407) mutation to S: No effect.
- E399 (≠ P410) mutation to A: Loss of aminomutase activity and increased product racemization. Gain of ammonia-lyase activity.; mutation to K: Loss of aminomutase and ammonia-lyase activity. Higher enantiomeric excess of (R)-beta-tyrosine.; mutation to M: Loss of aminomutase and ammonia-lyase activity.
- 399:406 (vs. 410:417, 13% identical) mutation to MIAQVTSA: Residual aminomutase activity.
- 427:433 (vs. 438:444, 29% identical) mutation to SAGREDH: Total loss of aminomutase activity.; mutation to SANQEDH: Total loss of aminomutase activity.
2rjsA Sgtam bound to substrate mimic (see paper)
36% identity, 95% coverage: 4:519/542 of query aligns to 2:502/526 of 2rjsA
- active site: Y52 (= Y57), G59 (= G64), H82 (= H87), N192 (= N203), Y295 (= Y302), R298 (= R305), F343 (= F355), Q429 (≠ E442)
- binding (3R)-3-amino-2,2-difluoro-3-(4-methoxyphenyl)propanoic acid: Y52 (= Y57), G59 (= G64), H82 (= H87), G141 (= G148), L143 (= L150), N192 (= N203), Y295 (= Y302), R298 (= R305), F343 (= F355), Q429 (≠ E442)
2rjrA Substrate mimic bound to sgtam (see paper)
36% identity, 95% coverage: 4:519/542 of query aligns to 2:502/526 of 2rjrA
- active site: Y52 (= Y57), G59 (= G64), H82 (= H87), N192 (= N203), Y295 (= Y302), R298 (= R305), F343 (= F355), Q429 (≠ E442)
- binding (2S,3S)-3-(4-fluorophenyl)-2,3-dihydroxypropanoic acid: Y52 (= Y57), G59 (= G64), H82 (= H87), G141 (= G148), L143 (= L150), N192 (= N203), F343 (= F355), Q429 (≠ E442)
2qveA Crystal structure of sgtam bound to mechanism based inhibitor (see paper)
36% identity, 95% coverage: 4:519/542 of query aligns to 2:502/526 of 2qveA
- active site: Y52 (= Y57), G59 (= G64), H82 (= H87), N192 (= N203), Y295 (= Y302), R298 (= R305), F343 (= F355), Q429 (≠ E442)
- binding (3R)-3-amino-2,2-difluoro-3-(4-hydroxyphenyl)propanoic acid: Y52 (= Y57), G59 (= G64), H82 (= H87), G141 (= G148), L143 (= L150), N192 (= N203), Y295 (= Y302), R298 (= R305), F343 (= F355), Q429 (≠ E442)
3kdzA X-ray crystal structure of a tyrosine aminomutase mutant construct with bound ligand (see paper)
36% identity, 95% coverage: 4:519/542 of query aligns to 3:503/527 of 3kdzA
- active site: F53 (≠ Y57), G60 (= G64), H83 (= H87), N193 (= N203), Y296 (= Y302), R299 (= R305), F344 (= F355), Q430 (≠ E442)
- binding tyrosine: F53 (≠ Y57), Y59 (≠ V63), G60 (= G64), H83 (= H87), G142 (= G148), N193 (= N203), Y296 (= Y302), R299 (= R305), F344 (= F355)
Q20502 Histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Caenorhabditis elegans (see paper)
32% identity, 98% coverage: 4:535/542 of query aligns to 130:633/677 of Q20502
- D536 (= D433) mutation to N: In am130; causes strong resistance to nickel and zinc toxicity.
3unvA Pantoea agglomerans phenylalanine aminomutase (see paper)
32% identity, 94% coverage: 9:520/542 of query aligns to 2:502/514 of 3unvA
- active site: Y53 (= Y57), G60 (= G64), V83 (≠ H87), L191 (= L201), D291 (= D300), S294 (= S303), G340 (= G353), D427 (≠ N440)
- binding phenylalanine: Y53 (= Y57), G60 (= G64), G142 (= G148), L144 (= L150), N326 (= N335), F342 (= F355)
- binding (3S)-3-amino-3-phenylpropanoic acid: Y53 (= Y57), G60 (= G64), G142 (= G148), N193 (= N203), N326 (= N335), F342 (= F355)
B2J528 Phenylalanine ammonia-lyase; EC 4.3.1.24 from Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (see paper)
33% identity, 89% coverage: 2:485/542 of query aligns to 24:495/569 of B2J528
- A167 (= A146) modified: Crosslink with 169, 5-imidazolinone (Ala-Gly)
- S168 (= S147) modified: 2,3-didehydroalanine (Ser)
- G169 (= G148) modified: Crosslink with 167, 5-imidazolinone (Ala-Gly)
2o7dA Tyrosine ammonia-lyase from rhodobacter sphaeroides, complexed with caffeate (see paper)
33% identity, 87% coverage: 52:520/542 of query aligns to 49:504/515 of 2o7dA
- active site: Y54 (= Y57), G61 (= G64), L84 (≠ H87), N195 (= N203), Y292 (= Y302), R295 (= R305), F342 (= F355), Q428 (≠ E442)
- binding caffeic acid: G61 (= G64), H83 (≠ A86), L84 (≠ H87), Y292 (= Y302), R295 (= R305), N424 (≠ K438), N427 (≠ S441), Q428 (≠ E442)
2o7eA Tyrosine ammonia-lyase from rhodobacter sphaeroides (his89phe variant), bound to 2-aminoindan-2-phosphonic acid (see paper)
33% identity, 87% coverage: 52:520/542 of query aligns to 49:504/515 of 2o7eA
- active site: Y54 (= Y57), G61 (= G64), L84 (≠ H87), N195 (= N203), Y292 (= Y302), R295 (= R305), F342 (= F355), Q428 (≠ E442)
- binding (2-amino-2,3-dihydro-1h-inden-2-yl)phosphonic acid: Y54 (= Y57), G143 (= G148), L145 (= L150), N195 (= N203), Y292 (= Y302), R295 (= R305), N325 (= N335), F342 (= F355)
6s7qA Crystal structure of ergothioneine degrading enzyme ergothionase from treponema denticola in complex with desmethyl-ergothioneine sulfonic acid (see paper)
29% identity, 98% coverage: 4:532/542 of query aligns to 3:496/497 of 6s7qA
- active site: Y53 (= Y57), G60 (= G64), D275 (= D300), A324 (≠ G353)
- binding (2~{S})-2-(dimethylamino)-3-(2-sulfo-1~{H}-imidazol-4-yl)propanoic acid: Y53 (= Y57), V59 (= V63), G60 (= G64), S194 (≠ N203), F326 (= F355), T380 (≠ V411), K383 (≠ C414), E411 (= E442)
Q3M5Z3 Phenylalanine ammonia-lyase; EC 4.3.1.24 from Trichormus variabilis (strain ATCC 29413 / PCC 7937) (Anabaena variabilis) (see 2 papers)
31% identity, 88% coverage: 2:479/542 of query aligns to 24:489/567 of Q3M5Z3
- L108 (≠ H87) mutation to A: Slightly decreases catalytic rate.; mutation to G: Decreases catalytic rate.
- A167 (= A146) modified: Crosslink with 169, 5-imidazolinone (Ala-Gly)
- S168 (= S147) modified: 2,3-didehydroalanine (Ser)
- G169 (= G148) modified: Crosslink with 167, 5-imidazolinone (Ala-Gly)
Sites not aligning to the query:
- 1:21 mutation Missing: No effect on enzyme activity.
- 503 C→S: Prevents formation of artifactual disulfide bonds and increases solubility; when associated with S-565.
- 565 C→S: Prevents formation of artifactual disulfide bonds and increases solubility; when associated with S-503.
5ltmB Crystal structure of phenylalanine ammonia-lyase from anabaena variabilis (y78f-c503s-c565s) bound to cinnamate (see paper)
31% identity, 88% coverage: 3:479/542 of query aligns to 1:463/537 of 5ltmB
- active site: F54 (≠ Y57), G61 (= G64), L84 (≠ H87), N197 (= N203), Y288 (= Y302), R291 (= R305), F337 (= F355), Q426 (≠ H444)
- binding hydrocinnamic acid: F60 (≠ V63), A143 (= A146), L145 (= L150), Y288 (= Y302), R291 (= R305)
P0DO55 Phenylalanine/tyrosine ammonia-lyase 1; FuPAL1; EC 4.3.1.25 from Fritillaria unibracteata (Sichuan fritillary) (see paper)
27% identity, 88% coverage: 4:479/542 of query aligns to 63:531/722 of P0DO55
- F141 (≠ A86) mutation to H: Increased activity toward L-tyrosine (L-Tyr) but reduced ability to use L-phenylalanine (L-Phe) as substrate.
- S208 (≠ A146) mutation to A: Higher binding affinity for L-phenylalanine (L-Phe) and decrease catalytic efficiency.
- I218 (≠ L156) mutation to P: Higher binding affinity for L-phenylalanine (L-Phe) and decrease catalytic efficiency.
- E490 (≠ K438) mutation to N: Higher binding affinity for L-phenylalanine (L-Phe) and decrease catalytic efficiency.
Q68G84 Phenylalanine aminomutase (L-beta-phenylalanine forming); Phenylalanine ammonia-lyase; EC 5.4.3.10; EC 4.3.1.24 from Taxus chinensis (Chinese yew) (Taxus wallichiana var. chinensis) (see 2 papers)
30% identity, 89% coverage: 1:485/542 of query aligns to 24:505/687 of Q68G84
- Y80 (= Y57) active site, Proton donor/acceptor; mutation Y->A,F: Abolishes enzyme activity.
- A175 (= A146) modified: Crosslink with 177, 5-imidazolinone (Ala-Gly)
- S176 (= S147) modified: 2,3-didehydroalanine (Ser)
- G177 (= G148) modified: Crosslink with 175, 5-imidazolinone (Ala-Gly)
- N231 (= N203) binding ; mutation to A: Abolishes the formation of the MIO cofactor and thereby abolishes enzyme activity.; mutation to X: Abolishes enzyme activity; when associated with X-355.
- Q319 (= Q299) binding ; mutation to M: Increases deamination activity with beta-Phe. Increases beta-regioselectivity in the amination of cinnamate. Abolishes enzyme activity; when associated with K-325.
- Y322 (= Y302) mutation to A: Abolishes the formation of the MIO cofactor and thereby abolishes enzyme activity.; mutation to X: Abolishes enzyme activity; when associated with X-371.
- R325 (= R305) binding ; mutation to K: Increases deamination activity with beta-Phe. Increases beta-regioselectivity in the amination of cinnamate. Abolishes enzyme activity; when associated with M-319.
- N355 (= N335) binding ; mutation to X: Abolishes enzyme activity; when associated with X-231.
- F371 (= F355) mutation to X: Abolishes enzyme activity; when associated with X-322.
- N458 (≠ S441) binding
Q6GZ04 Phenylalanine aminomutase (L-beta-phenylalanine forming); Phenylalanine ammonia-lyase; EC 5.4.3.10; EC 4.3.1.24 from Taxus canadensis (Canadian yew) (see paper)
30% identity, 89% coverage: 1:485/542 of query aligns to 24:505/698 of Q6GZ04
- Y80 (= Y57) mutation to F: Abolishes enzyme activity.
- L104 (= L83) mutation to A: Decreases enzyme activity.
- Q319 (= Q299) binding
- R325 (= R305) binding
Query Sequence
>HSERO_RS22680 FitnessBrowser__HerbieS:HSERO_RS22680
MSTITIDGFNLTAAQVVSVARAPHLKVALADSSRAALKQSRDYIESTWMHDEAPMMYSFN
TGVGLLKDTRIKVEHIELFQTQLIRAHSAGIGEAFSEEVSRATMLLRANAFASNYSAPRV
EVVDRLLAFINAGIHPIMPQKGSVGASGDLAPLAYLAAAIAGFDEAEVMYQGQRMRATEA
IEQAGIGPVKFDLKAKDASALINGCTASLAVAILAAHDARHLLTDACLSLGLTLEAMRAE
MSAFDPRIQQARPHAGQIKTAEVIRTLLQGSTRTTHAARAVQLPDELRRTDIAYTARIQD
VYSLRCAPQVYGPVFDALDYIDTIIEKETNSATDNPLIFHKEEGEGFEIISGGNFHGQYL
AQAMDLLAMAITDLGSICERRIARLIDPTLSWGLPRNLMSGVRGVNTGYPVVQCSMSSLV
MENRTLCMPGSVDSIPSKGNSEDHISNSTWCARKAMTVVQNTQYIVGVEMLLAAQALTMT
EALLKDFVLGQGTQAAYAEIRRQIPACLDGDRWFHDDVQAAHGFVVSGSVRNAVLAAIGE
FV
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory