SitesBLAST – Find functional sites

 

SitesBLAST

Comparing HSERO_RS23110 FitnessBrowser__HerbieS:HSERO_RS23110 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

1co6A Crystal structure of ferrocytochrome c2 from rhodopseudomonas viridis (see paper)
37% identity, 94% coverage: 5:103/105 of query aligns to 2:100/107 of 1co6A

query
sites
1co6A
D
 
D
V
 
A
A
 
A
A
 
S
G
 
G
R
 
E
A
 
Q
A
 
V
F
 
F
A
 
K
K
 
Q
C
|
C
A
 
L
S
 
V
C
|
C
H
|
H
A
 
S
V
 
I
G
 
G
P
 
P
S
 
G
A
 
A
R
 
K
A
 
N
G
 
K
F
 
V
G
 
G
P
|
P
Q
 
V
L
 
L
S
 
N
N
 
G
V
 
L
I
 
F
G
 
G
R
 
R
K
 
H
A
x
S
G
 
G
S
 
T
T
 
I
P
 
E
D
 
G
F
 
F
K
 
A
Y
|
Y
S
|
S
P
 
D
A
 
A
M
x
N
A
 
K
N
 
N
A
 
S
G
 
G
F
 
I
V
 
T
W
|
W
T
 
T
E
 
E
D
 
E
K
 
V
L
x
F
R
 
R
A
 
E
F
 
Y
L
x
I
K
 
R
A
 
D
P
 
P
S
 
K
D
 
A
V
 
K
V
 
I
P
 
P
G
 
G
N
x
T
K
|
K
M
|
M
R
 
I
F
|
F
W
 
A
G
 
G
I
 
V
G
 
K
S
 
D
D
 
E
K
 
Q
Q
 
K
I
 
V
D
 
S
D
 
D
I
 
L
L
 
I
A
 
A
Y
 
Y
L
 
I
R
 
K
T
 
Q
F
 
F

P00083 Cytochrome c2 from Blastochloris viridis (Rhodopseudomonas viridis) (see 2 papers)
36% identity, 91% coverage: 8:103/105 of query aligns to 25:120/127 of P00083

query
sites
P00083
A
x
S
G
|
G
R
x
E
A
x
Q
A
x
V
F
|
F
A
x
K
K
x
Q
C
|
C
A
x
L
S
x
V
C
|
C
H
|
H
A
x
S
V
x
I
G
|
G
P
|
P
S
x
G
A
|
A
R
x
K
A
x
N
G
x
K
F
x
V
G
|
G
P
|
P
Q
x
V
L
|
L
S
x
N
N
x
G
V
x
L
I
x
F
G
|
G
R
|
R
K
x
H
A
x
S
G
|
G
S
x
T
T
x
I
P
x
E
D
x
G
F
|
F
K
x
A
Y
|
Y
S
|
S
P
x
D
A
|
A
M
x
N
A
x
K
N
|
N
A
x
S
G
|
G
F
x
I
V
x
T
W
|
W
T
|
T
E
|
E
D
x
E
K
x
V
L
x
F
R
|
R
A
x
E
F
x
Y
L
x
I
K
x
R
A
x
D
P
|
P
S
x
K
D
x
A
V
x
K
V
x
I
P
|
P
G
|
G
N
x
T
K
|
K
M
|
M
R
x
I
F
|
F
W
x
A
G
|
G
I
x
V
G
x
K
S
x
D
D
x
E
K
x
Q
Q
x
K
I
x
V
D
x
S
D
|
D
I
x
L
L
x
I
A
|
A
Y
|
Y
L
x
I
R
x
K
T
x
Q
F
|
F

Sites not aligning to the query:

P00004 Cytochrome c from Equus caballus (Horse) (see 2 papers)
40% identity, 93% coverage: 4:101/105 of query aligns to 2:100/105 of P00004

query
sites
P00004
G
|
G
D
 
D
V
 
V
A
 
E
A
 
K
G
 
G
R
 
K
A
 
K
A
 
I
F
 
F
A
 
V
-
 
Q
K
 
K
C
 
C
A
 
A
S
 
Q
C
 
C
H
|
H
A
 
T
V
 
V
G
 
E
P
 
K
S
 
G
A
 
G
R
 
K
A
 
H
G
 
K
F
 
T
G
 
G
P
 
P
Q
 
N
L
 
L
S
 
H
N
 
G
V
 
L
I
 
F
G
 
G
R
 
R
K
 
K
A
 
T
G
 
G
S
 
Q
T
 
A
P
 
P
D
 
G
F
 
F
K
 
T
Y
 
Y
S
 
T
P
 
D
A
 
A
M
 
N
A
 
K
N
 
N
A
 
K
G
 
G
F
 
I
V
 
T
W
 
W
T
 
K
E
 
E
D
 
E
K
 
T
L
 
L
R
 
M
A
 
E
F
 
Y
L
 
L
K
 
E
A
 
N
P
 
P
S
 
K
D
 
K
V
 
Y
V
 
I
P
 
P
G
 
G
N
 
T
K
 
K
M
 
M
R
 
I
F
 
F
W
 
A
G
 
G
I
 
I
G
 
K
S
 
K
D
 
K
K
 
T
Q
 
E
I
 
R
D
 
E
D
 
D
I
 
L
L
 
I
A
 
A
Y
 
Y
L
 
L
R
 
K

Sites not aligning to the query:

6suvAaA Cytochrome c
40% identity, 93% coverage: 4:101/105 of query aligns to 1:99/104 of 6suvAaA

query
sites
6suvAaA
G
 
G
D
 
D
V
 
V
A
x
E
A
 
K
G
 
G
R
x
K
A
x
K
A
 
I
F
 
F
A
x
V
-
 
Q
K
 
K
C
|
C
A
 
A
S
 
Q
C
|
C
H
|
H
A
 
T
V
 
V
G
 
E
P
 
K
S
 
G
A
 
G
R
 
K
A
 
H
G
 
K
F
x
T
G
|
G
P
|
P
Q
 
N
L
 
L
S
 
H
N
 
G
V
x
L
I
 
F
G
 
G
R
 
R
K
 
K
A
x
T
G
|
G
S
 
Q
T
 
A
P
 
P
D
 
G
F
 
F
K
 
T
Y
|
Y
S
x
T
P
 
D
A
 
A
M
x
N
A
 
K
N
 
N
A
 
K
G
 
G
F
 
I
V
 
T
W
|
W
T
 
K
E
 
E
D
 
E
K
 
T
L
 
L
R
 
M
A
 
E
F
x
Y
L
|
L
K
 
E
A
 
N
P
 
P
S
x
K
D
x
K
V
 
Y
V
 
I
P
|
P
G
 
G
N
x
T
K
|
K
M
|
M
R
 
I
F
|
F
W
 
A
G
 
G
I
 
I
G
x
K
S
x
K
D
x
K
K
x
T
Q
x
E
I
 
R
D
 
E
D
 
D
I
 
L
L
 
I
A
 
A
Y
 
Y
L
 
L
R
 
K

4rszA The x-ray structure of the primary adduct formed in the reaction between cisplatin and cytochromE C (see paper)
40% identity, 93% coverage: 4:101/105 of query aligns to 1:99/104 of 4rszA

query
sites
4rszA
G
 
G
D
 
D
V
 
V
A
 
E
A
 
K
G
 
G
R
 
K
A
 
K
A
 
I
F
 
F
A
 
V
-
 
Q
K
|
K
C
|
C
A
 
A
S
 
Q
C
|
C
H
|
H
A
 
T
V
 
V
G
 
E
P
 
K
S
 
G
A
 
G
R
 
K
A
 
H
G
 
K
F
 
T
G
|
G
P
|
P
Q
 
N
L
 
L
S
 
H
N
 
G
V
 
L
I
 
F
G
 
G
R
 
R
K
 
K
A
 
T
G
 
G
S
 
Q
T
 
A
P
 
P
D
 
G
F
 
F
K
 
T
Y
|
Y
S
x
T
P
 
D
A
 
A
M
x
N
A
 
K
N
 
N
A
 
K
G
 
G
F
 
I
V
 
T
W
|
W
T
 
K
E
|
E
D
 
E
K
 
T
L
 
L
R
x
M
A
 
E
F
x
Y
L
 
L
K
 
E
A
 
N
P
 
P
S
 
K
D
 
K
V
 
Y
V
 
I
P
 
P
G
 
G
N
x
T
K
|
K
M
|
M
R
x
I
F
 
F
W
 
A
G
 
G
I
 
I
G
 
K
S
 
K
D
 
K
K
 
T
Q
 
E
I
 
R
D
x
E
D
 
D
I
 
L
L
 
I
A
 
A
Y
 
Y
L
 
L
R
 
K

1wejF Igg1 fab fragment (of e8 antibody) complexed with horse cytochromE C at 1.8 a resolution (see paper)
40% identity, 93% coverage: 4:101/105 of query aligns to 1:99/104 of 1wejF

query
sites
1wejF
G
 
G
D
 
D
V
 
V
A
 
E
A
 
K
G
 
G
R
 
K
A
 
K
A
 
I
F
 
F
A
 
V
-
 
Q
K
|
K
C
|
C
A
 
A
S
 
Q
C
|
C
H
|
H
A
 
T
V
 
V
G
 
E
P
 
K
S
 
G
A
 
G
R
 
K
A
 
H
G
 
K
F
 
T
G
|
G
P
|
P
Q
 
N
L
 
L
S
 
H
N
 
G
V
 
L
I
 
F
G
 
G
R
 
R
K
 
K
A
 
T
G
|
G
S
 
Q
T
 
A
P
 
P
D
 
G
F
 
F
K
 
T
Y
|
Y
S
x
T
P
 
D
A
 
A
M
x
N
A
 
K
N
 
N
A
 
K
G
 
G
F
 
I
V
 
T
W
|
W
T
 
K
E
 
E
D
 
E
K
 
T
L
 
L
R
 
M
A
 
E
F
x
Y
L
|
L
K
 
E
A
 
N
P
 
P
S
 
K
D
 
K
V
 
Y
V
 
I
P
 
P
G
 
G
N
x
T
K
|
K
M
|
M
R
 
I
F
|
F
W
 
A
G
 
G
I
 
I
G
 
K
S
 
K
D
 
K
K
 
T
Q
 
E
I
 
R
D
 
E
D
 
D
I
 
L
L
 
I
A
 
A
Y
 
Y
L
 
L
R
 
K

1m60A Solution structure of zinc-substituted cytochromE C (see paper)
40% identity, 93% coverage: 4:101/105 of query aligns to 1:99/104 of 1m60A

query
sites
1m60A
G
 
G
D
 
D
V
 
V
A
 
E
A
 
K
G
 
G
R
 
K
A
 
K
A
 
I
F
 
F
A
 
V
-
 
Q
K
|
K
C
|
C
A
 
A
S
 
Q
C
|
C
H
|
H
A
 
T
V
 
V
G
 
E
P
 
K
S
 
G
A
 
G
R
 
K
A
 
H
G
 
K
F
x
T
G
 
G
P
 
P
Q
 
N
L
|
L
S
 
H
N
 
G
V
 
L
I
 
F
G
 
G
R
 
R
K
 
K
A
x
T
G
|
G
S
 
Q
T
 
A
P
 
P
D
 
G
F
 
F
K
 
T
Y
|
Y
S
x
T
P
 
D
A
 
A
M
x
N
A
 
K
N
 
N
A
 
K
G
 
G
F
 
I
V
 
T
W
|
W
T
 
K
E
 
E
D
 
E
K
 
T
L
 
L
R
 
M
A
 
E
F
x
Y
L
|
L
K
 
E
A
 
N
P
 
P
S
 
K
D
 
K
V
 
Y
V
 
I
P
 
P
G
 
G
N
 
T
K
|
K
M
|
M
R
 
I
F
|
F
W
 
A
G
 
G
I
 
I
G
 
K
S
 
K
D
 
K
K
 
T
Q
 
E
I
 
R
D
 
E
D
 
D
I
x
L
L
 
I
A
 
A
Y
 
Y
L
 
L
R
 
K

1fi7A Solution structure of the imidazole complex of cytochromE C (see paper)
40% identity, 93% coverage: 4:101/105 of query aligns to 1:99/104 of 1fi7A

query
sites
1fi7A
G
 
G
D
 
D
V
 
V
A
 
E
A
 
K
G
 
G
R
 
K
A
 
K
A
 
I
F
 
F
A
 
V
-
 
Q
K
 
K
C
|
C
A
 
A
S
 
Q
C
|
C
H
|
H
A
 
T
V
 
V
G
 
E
P
 
K
S
 
G
A
 
G
R
 
K
A
 
H
G
 
K
F
x
T
G
|
G
P
|
P
Q
 
N
L
|
L
S
 
H
N
 
G
V
 
L
I
 
F
G
 
G
R
 
R
K
 
K
A
 
T
G
 
G
S
 
Q
T
 
A
P
 
P
D
 
G
F
 
F
K
 
T
Y
 
Y
S
 
T
P
 
D
A
 
A
M
x
N
A
 
K
N
 
N
A
 
K
G
 
G
F
 
I
V
 
T
W
|
W
T
 
K
E
 
E
D
 
E
K
 
T
L
|
L
R
 
M
A
 
E
F
x
Y
L
|
L
K
 
E
A
 
N
P
 
P
S
 
K
D
 
K
V
 
Y
V
 
I
P
 
P
G
 
G
N
 
T
K
|
K
M
 
M
R
 
I
F
 
F
W
 
A
G
 
G
I
 
I
G
 
K
S
 
K
D
 
K
K
 
T
Q
 
E
I
 
R
D
 
E
D
 
D
I
 
L
L
 
I
A
 
A
Y
 
Y
L
 
L
R
 
K

1akkA Solution structure of oxidized horse heart cytochromE C, nmr, minimized average structure (see paper)
40% identity, 93% coverage: 4:101/105 of query aligns to 1:99/104 of 1akkA

query
sites
1akkA
G
 
G
D
 
D
V
 
V
A
 
E
A
 
K
G
 
G
R
 
K
A
 
K
A
 
I
F
 
F
A
 
V
-
 
Q
K
 
K
C
|
C
A
 
A
S
 
Q
C
|
C
H
|
H
A
 
T
V
 
V
G
 
E
P
 
K
S
 
G
A
 
G
R
 
K
A
 
H
G
 
K
F
x
T
G
 
G
P
 
P
Q
 
N
L
 
L
S
 
H
N
 
G
V
 
L
I
 
F
G
 
G
R
 
R
K
 
K
A
x
T
G
 
G
S
 
Q
T
 
A
P
 
P
D
 
G
F
 
F
K
 
T
Y
|
Y
S
x
T
P
 
D
A
 
A
M
x
N
A
 
K
N
 
N
A
 
K
G
 
G
F
 
I
V
 
T
W
|
W
T
 
K
E
 
E
D
 
E
K
 
T
L
 
L
R
 
M
A
 
E
F
x
Y
L
 
L
K
 
E
A
 
N
P
 
P
S
 
K
D
 
K
V
 
Y
V
 
I
P
 
P
G
 
G
N
x
T
K
|
K
M
|
M
R
 
I
F
|
F
W
 
A
G
 
G
I
 
I
G
 
K
S
 
K
D
 
K
K
 
T
Q
 
E
I
 
R
D
 
E
D
 
D
I
x
L
L
 
I
A
 
A
Y
 
Y
L
 
L
R
 
K

P00014 Cytochrome c from Macropus giganteus (Eastern gray kangaroo) (see paper)
41% identity, 93% coverage: 4:101/105 of query aligns to 2:100/105 of P00014

query
sites
P00014
G
|
G
D
 
D
V
 
V
A
 
E
A
 
K
G
 
G
R
 
K
A
 
K
A
 
I
F
 
F
A
 
V
-
 
Q
K
 
K
C
|
C
A
 
A
S
 
Q
C
|
C
H
 
H
A
 
T
V
 
V
G
 
E
P
 
K
S
 
G
A
 
G
R
 
K
A
 
H
G
 
K
F
 
T
G
 
G
P
 
P
Q
 
N
L
 
L
S
 
N
N
 
G
V
 
I
I
 
F
G
 
G
R
 
R
K
 
K
A
 
T
G
 
G
S
 
Q
T
 
A
P
 
P
D
 
G
F
 
F
K
 
T
Y
 
Y
S
 
T
P
 
D
A
 
A
M
 
N
A
 
K
N
 
N
A
 
K
G
 
G
F
 
I
V
 
I
W
 
W
T
 
G
E
 
E
D
 
D
K
 
T
L
 
L
R
 
M
A
 
E
F
 
Y
L
 
L
K
 
E
A
 
N
P
 
P
S
 
K
D
 
K
V
 
Y
V
 
I
P
 
P
G
 
G
N
 
T
K
 
K
M
 
M
R
 
I
F
 
F
W
 
A
G
 
G
I
 
I
G
 
K
S
 
K
D
 
K
K
 
G
Q
 
E
I
 
R
D
 
A
D
 
D
I
 
L
L
 
I
A
 
A
Y
 
Y
L
 
L
R
 
K

Sites not aligning to the query:

P81280 Cytochrome c from Alligator mississippiensis (American alligator) (see paper)
41% identity, 93% coverage: 4:101/105 of query aligns to 2:100/105 of P81280

query
sites
P81280
G
|
G
D
 
D
V
 
V
A
 
E
A
 
K
G
 
G
R
 
K
A
 
K
A
 
I
F
 
F
A
 
V
-
 
Q
K
 
K
C
 
C
A
 
A
S
 
Q
C
 
C
H
 
H
A
 
T
V
 
V
G
 
E
P
 
K
S
 
G
A
 
G
R
 
K
A
 
H
G
 
K
F
 
T
G
 
G
P
 
P
Q
 
N
L
 
L
S
 
H
N
 
G
V
 
L
I
 
I
G
 
G
R
 
R
K
 
K
A
 
T
G
 
G
S
 
Q
T
 
A
P
 
P
D
 
G
F
 
F
K
 
S
Y
 
Y
S
 
T
P
 
E
A
 
A
M
 
N
A
 
K
N
 
N
A
 
K
G
 
G
F
 
I
V
 
T
W
 
W
T
 
G
E
 
E
D
 
E
K
 
T
L
 
L
R
 
M
A
 
E
F
 
Y
L
 
L
K
 
E
A
 
N
P
 
P
S
 
K
D
 
K
V
 
Y
V
 
I
P
 
P
G
 
G
N
 
T
K
 
K
M
 
M
R
 
I
F
 
F
W
 
A
G
 
G
I
 
I
G
 
K
S
 
K
D
 
K
K
 
P
Q
 
E
I
 
R
D
 
A
D
 
D
I
 
L
L
 
I
A
 
A
Y
 
Y
L
 
L
R
 
K

Sites not aligning to the query:

P99999 Cytochrome c from Homo sapiens (Human) (see 4 papers)
39% identity, 93% coverage: 4:101/105 of query aligns to 2:100/105 of P99999

query
sites
P99999
G
|
G
D
 
D
V
 
V
A
 
E
A
x
K
G
 
G
R
 
K
A
 
K
A
 
I
F
|
F
-
 
I
A
 
M
K
 
K
C
|
C
A
 
S
S
 
Q
C
|
C
H
|
H
A
 
T
V
 
V
G
 
E
P
 
K
S
 
G
A
 
G
R
 
K
A
 
H
G
 
K
F
 
T
G
 
G
P
 
P
Q
 
N
L
 
L
S
 
H
N
 
G
V
 
L
I
 
F
G
 
G
R
 
R
K
 
K
A
 
T
G
|
G
S
 
Q
T
 
A
P
 
P
D
 
G
F
 
Y
K
 
S
Y
 
Y
S
 
T
P
 
A
A
 
A
M
 
N
A
 
K
N
 
N
A
 
K
G
 
G
F
 
I
V
 
I
W
 
W
T
 
G
E
 
E
D
 
D
K
 
T
L
 
L
R
 
M
A
 
E
F
 
Y
L
 
L
K
 
E
A
 
N
P
 
P
S
 
K
D
 
K
V
 
Y
V
 
I
P
 
P
G
 
G
N
 
T
K
 
K
M
 
M
R
 
I
F
 
F
W
 
V
G
 
G
I
 
I
G
 
K
S
 
K
D
 
K
K
 
E
Q
 
E
I
 
R
D
 
A
D
 
D
I
 
L
L
 
I
A
 
A
Y
 
Y
L
 
L
R
 
K

Sites not aligning to the query:

6ff5A X-ray structure of bovine heart cytochromE C at high ionic strength (see paper)
40% identity, 93% coverage: 4:101/105 of query aligns to 1:99/104 of 6ff5A

query
sites
6ff5A
G
 
G
D
 
D
V
 
V
A
 
E
A
 
K
G
 
G
R
x
K
A
 
K
A
 
I
F
 
F
A
 
V
-
 
Q
K
|
K
C
|
C
A
 
A
S
 
Q
C
|
C
H
|
H
A
 
T
V
 
V
G
 
E
P
 
K
S
 
G
A
 
G
R
 
K
A
 
H
G
 
K
F
 
T
G
|
G
P
|
P
Q
 
N
L
 
L
S
 
H
N
 
G
V
 
L
I
 
F
G
 
G
R
 
R
K
 
K
A
 
T
G
|
G
S
 
Q
T
 
A
P
 
P
D
 
G
F
 
F
K
 
S
Y
|
Y
S
x
T
P
 
D
A
 
A
M
x
N
A
 
K
N
 
N
A
 
K
G
 
G
F
 
I
V
 
T
W
|
W
T
 
G
E
 
E
D
 
E
K
 
T
L
 
L
R
 
M
A
 
E
F
x
Y
L
 
L
K
x
E
A
 
N
P
 
P
S
 
K
D
 
K
V
 
Y
V
 
I
P
 
P
G
 
G
N
x
T
K
|
K
M
|
M
R
x
I
F
|
F
W
 
A
G
 
G
I
 
I
G
x
K
S
x
K
D
 
K
K
 
G
Q
x
E
I
 
R
D
 
E
D
 
D
I
 
L
L
 
I
A
 
A
Y
 
Y
L
 
L
R
 
K

Sites not aligning to the query:

P62894 Cytochrome c from Bos taurus (Bovine) (see 3 papers)
40% identity, 93% coverage: 4:101/105 of query aligns to 2:100/105 of P62894

query
sites
P62894
G
|
G
D
 
D
V
 
V
A
 
E
A
 
K
G
 
G
R
 
K
A
 
K
A
 
I
F
 
F
A
 
V
-
 
Q
K
 
K
C
 
C
A
 
A
S
 
Q
C
 
C
H
 
H
A
 
T
V
 
V
G
 
E
P
 
K
S
 
G
A
 
G
R
 
K
A
 
H
G
 
K
F
 
T
G
 
G
P
 
P
Q
 
N
L
 
L
S
 
H
N
 
G
V
 
L
I
 
F
G
 
G
R
 
R
K
 
K
A
 
T
G
 
G
S
 
Q
T
 
A
P
 
P
D
 
G
F
 
F
K
 
S
Y
|
Y
S
 
T
P
 
D
A
 
A
M
 
N
A
 
K
N
 
N
A
 
K
G
 
G
F
 
I
V
 
T
W
 
W
T
 
G
E
 
E
D
 
E
K
 
T
L
 
L
R
 
M
A
 
E
F
 
Y
L
 
L
K
 
E
A
 
N
P
 
P
S
 
K
D
 
K
V
 
Y
V
 
I
P
 
P
G
 
G
N
 
T
K
 
K
M
 
M
R
 
I
F
 
F
W
 
A
G
 
G
I
 
I
G
 
K
S
 
K
D
 
K
K
 
G
Q
 
E
I
 
R
D
 
E
D
 
D
I
 
L
L
 
I
A
 
A
Y
|
Y
L
 
L
R
 
K

Sites not aligning to the query:

P21665 Cytochrome c from Varanus varius (Lace monitor lizard) (Lacerta varia) (see paper)
40% identity, 93% coverage: 4:101/105 of query aligns to 2:100/105 of P21665

query
sites
P21665
G
|
G
D
 
D
V
 
V
A
 
E
A
 
K
G
 
G
R
 
K
A
 
K
A
 
I
F
 
F
A
 
V
-
 
Q
K
 
K
C
 
C
A
 
S
S
 
Q
C
 
C
H
 
H
A
 
T
V
 
V
G
 
E
P
 
K
S
 
G
A
 
G
R
 
K
A
 
H
G
 
K
F
 
T
G
 
G
P
 
P
Q
 
N
L
 
L
S
 
H
N
 
Q
V
 
L
I
 
F
G
 
G
R
 
R
K
 
K
A
 
T
G
 
G
S
 
E
T
 
A
P
 
E
D
 
G
F
 
F
K
 
S
Y
 
Y
S
 
T
P
 
A
A
 
A
M
 
N
A
 
K
N
 
N
A
 
K
G
 
G
F
 
I
V
 
T
W
 
W
T
 
G
E
 
E
D
 
D
K
 
T
L
 
L
R
 
F
A
 
E
F
 
Y
L
 
L
K
 
E
A
 
N
P
 
P
S
 
K
D
 
K
V
 
Y
V
 
I
P
 
P
G
 
G
N
 
T
K
 
K
M
 
M
R
 
I
F
 
F
W
 
A
G
 
G
I
 
I
G
 
K
S
 
K
D
 
K
K
 
T
Q
 
E
I
 
R
D
 
D
D
 
D
I
 
L
L
 
I
A
 
A
Y
 
Y
L
 
L
R
 
K

Sites not aligning to the query:

P00028 Cytochrome c from Entosphenus tridentatus (Pacific lamprey) (Lampetra tridentata) (see paper)
39% identity, 93% coverage: 4:101/105 of query aligns to 2:100/105 of P00028

query
sites
P00028
G
|
G
D
 
D
V
 
V
A
 
E
A
 
K
G
 
G
R
 
K
A
 
K
A
 
V
F
 
F
A
 
V
-
 
Q
K
 
K
C
|
C
A
 
S
S
 
Q
C
|
C
H
 
H
A
 
T
V
 
V
G
 
E
P
 
K
S
 
A
A
 
G
R
 
K
A
 
H
G
 
K
F
 
T
G
 
G
P
 
P
Q
 
N
L
 
L
S
 
S
N
 
G
V
 
L
I
 
F
G
 
G
R
 
R
K
 
K
A
 
T
G
 
G
S
 
Q
T
 
A
P
 
P
D
 
G
F
 
F
K
 
S
Y
 
Y
S
 
T
P
 
D
A
 
A
M
 
N
A
 
K
N
 
S
A
 
K
G
 
G
F
 
I
V
 
V
W
 
W
T
 
N
E
 
Q
D
 
E
K
 
T
L
 
L
R
 
F
A
 
V
F
 
Y
L
 
L
K
 
E
A
 
N
P
 
P
S
 
K
D
 
K
V
 
Y
V
 
I
P
 
P
G
 
G
N
 
T
K
 
K
M
 
M
R
 
I
F
 
F
W
 
A
G
 
G
I
 
I
G
 
K
S
 
K
D
 
E
K
 
G
Q
 
E
I
 
R
D
 
K
D
 
D
I
 
L
L
 
I
A
 
A
Y
 
Y
L
 
L
R
 
K

Sites not aligning to the query:

P00002 Cytochrome c from Macaca mulatta (Rhesus macaque) (see paper)
39% identity, 93% coverage: 4:101/105 of query aligns to 2:100/105 of P00002

query
sites
P00002
G
|
G
D
 
D
V
 
V
A
 
E
A
 
K
G
 
G
R
 
K
A
 
K
A
 
I
F
 
F
-
 
I
A
 
M
K
 
K
C
 
C
A
 
S
S
 
Q
C
 
C
H
 
H
A
 
T
V
 
V
G
 
E
P
 
K
S
 
G
A
 
G
R
 
K
A
 
H
G
 
K
F
 
T
G
 
G
P
 
P
Q
 
N
L
 
L
S
 
H
N
 
G
V
 
L
I
 
F
G
 
G
R
 
R
K
 
K
A
 
T
G
 
G
S
 
Q
T
 
A
P
 
P
D
 
G
F
 
Y
K
 
S
Y
 
Y
S
 
T
P
 
A
A
 
A
M
 
N
A
 
K
N
 
N
A
 
K
G
 
G
F
 
I
V
 
T
W
 
W
T
 
G
E
 
E
D
 
D
K
 
T
L
 
L
R
 
M
A
 
E
F
 
Y
L
 
L
K
 
E
A
 
N
P
 
P
S
 
K
D
 
K
V
 
Y
V
 
I
P
 
P
G
 
G
N
 
T
K
 
K
M
 
M
R
 
I
F
 
F
W
 
V
G
 
G
I
 
I
G
 
K
S
 
K
D
 
K
K
 
E
Q
 
E
I
 
R
D
 
A
D
 
D
I
 
L
L
 
I
A
 
A
Y
 
Y
L
 
L
R
 
K

Sites not aligning to the query:

P00015 Cytochrome c, testis-specific from Mus musculus (Mouse) (see paper)
39% identity, 93% coverage: 4:101/105 of query aligns to 2:100/105 of P00015

query
sites
P00015
G
|
G
D
 
D
V
 
A
A
 
E
A
 
A
G
 
G
R
 
K
A
 
K
A
 
I
F
 
F
A
 
V
-
 
Q
K
 
K
C
|
C
A
 
A
S
 
Q
C
|
C
H
 
H
A
 
T
V
 
V
G
 
E
P
 
K
S
 
G
A
 
G
R
 
K
A
 
H
G
 
K
F
 
T
G
 
G
P
 
P
Q
 
N
L
 
L
S
 
W
N
 
G
V
 
L
I
 
F
G
 
G
R
 
R
K
 
K
A
 
T
G
 
G
S
 
Q
T
 
A
P
 
P
D
 
G
F
 
F
K
 
S
Y
 
Y
S
 
T
P
 
D
A
 
A
M
 
N
A
 
K
N
 
N
A
 
K
G
 
G
F
 
V
V
 
I
W
 
W
T
 
S
E
 
E
D
 
E
K
 
T
L
 
L
R
 
M
A
 
E
F
 
Y
L
 
L
K
 
E
A
 
N
P
 
P
S
 
K
D
 
K
V
 
Y
V
 
I
P
 
P
G
 
G
N
 
T
K
 
K
M
 
M
R
 
I
F
 
F
W
 
A
G
 
G
I
 
I
G
 
K
S
 
K
D
 
K
K
 
S
Q
 
E
I
 
R
D
 
E
D
 
D
I
 
L
L
 
I
A
 
K
Y
 
Y
L
 
L
R
 
K

Sites not aligning to the query:

P00007 Cytochrome c from Hippopotamus amphibius (Hippopotamus) (see paper)
40% identity, 93% coverage: 4:101/105 of query aligns to 2:100/105 of P00007

query
sites
P00007
G
|
G
D
 
D
V
 
V
A
 
E
A
 
K
G
 
G
R
 
K
A
 
K
A
 
I
F
 
F
A
 
V
-
 
Q
K
 
K
C
 
C
A
 
A
S
 
Q
C
 
C
H
 
H
A
 
T
V
 
V
G
 
E
P
 
K
S
 
G
A
 
G
R
 
K
A
 
H
G
 
K
F
 
T
G
 
G
P
 
P
Q
 
N
L
 
L
S
 
H
N
 
G
V
 
L
I
 
F
G
 
G
R
 
R
K
 
K
A
 
T
G
 
G
S
 
Q
T
 
S
P
 
P
D
 
G
F
 
F
K
 
S
Y
 
Y
S
 
T
P
 
D
A
 
A
M
 
N
A
 
K
N
 
N
A
 
K
G
 
G
F
 
I
V
 
T
W
 
W
T
 
G
E
 
E
D
 
E
K
 
T
L
 
L
R
 
M
A
 
E
F
 
Y
L
 
L
K
 
E
A
 
N
P
 
P
S
 
K
D
 
K
V
 
Y
V
 
I
P
 
P
G
 
G
N
 
T
K
 
K
M
 
M
R
 
I
F
 
F
W
 
A
G
 
G
I
 
I
G
 
K
S
 
K
D
 
K
K
 
G
Q
 
E
I
 
R
D
 
A
D
 
D
I
 
L
L
 
I
A
 
A
Y
 
Y
L
 
L
R
 
K

Sites not aligning to the query:

2aiuA Crystal structure of mouse testicular cytochromE C at 1.6 angstrom (see paper)
39% identity, 93% coverage: 4:101/105 of query aligns to 1:99/104 of 2aiuA

query
sites
2aiuA
G
 
G
D
 
D
V
 
A
A
 
E
A
 
A
G
 
G
R
 
K
A
 
K
A
 
I
F
 
F
A
 
V
-
 
Q
K
 
K
C
|
C
A
 
A
S
x
Q
C
|
C
H
|
H
A
 
T
V
 
V
G
 
E
P
 
K
S
 
G
A
 
G
R
 
K
A
 
H
G
 
K
F
 
T
G
 
G
P
|
P
Q
 
N
L
 
L
S
 
W
N
 
G
V
x
L
I
 
F
G
 
G
R
 
R
K
 
K
A
 
T
G
|
G
S
 
Q
T
 
A
P
 
P
D
 
G
F
 
F
K
 
S
Y
|
Y
S
x
T
P
 
D
A
 
A
M
x
N
A
 
K
N
 
N
A
 
K
G
 
G
F
 
V
V
 
I
W
|
W
T
 
S
E
 
E
D
 
E
K
 
T
L
 
L
R
 
M
A
 
E
F
x
Y
L
|
L
K
 
E
A
 
N
P
 
P
S
 
K
D
 
K
V
 
Y
V
 
I
P
 
P
G
 
G
N
x
T
K
|
K
M
|
M
R
 
I
F
|
F
W
 
A
G
 
G
I
 
I
G
 
K
S
 
K
D
 
K
K
 
S
Q
 
E
I
 
R
D
 
E
D
 
D
I
 
L
L
 
I
A
 
K
Y
 
Y
L
 
L
R
 
K

Query Sequence

>HSERO_RS23110 FitnessBrowser__HerbieS:HSERO_RS23110
LAAGDVAAGRAAFAKCASCHAVGPSARAGFGPQLSNVIGRKAGSTPDFKYSPAMANAGFV
WTEDKLRAFLKAPSDVVPGNKMRFWGIGSDKQIDDILAYLRTFKP

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory