Comparing HSERO_RS23780 FitnessBrowser__HerbieS:HSERO_RS23780 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 13 hits to proteins with known functional sites (download)
4qhqA The structure of a nutrient binding protein from burkholderia cenocepacia bound to methionine
54% identity, 88% coverage: 34:276/276 of query aligns to 1:241/241 of 4qhqA
3tqwA Structure of a abc transporter, periplasmic substrate-binding protein from coxiella burnetii (see paper)
48% identity, 88% coverage: 34:275/276 of query aligns to 1:235/235 of 3tqwA
4yahX Crystal structure of the methionine binding protein, metq (see paper)
45% identity, 88% coverage: 35:276/276 of query aligns to 5:243/245 of 4yahX
P04846 Lipoprotein 28 from Escherichia coli (strain K12) (see paper)
40% identity, 90% coverage: 28:276/276 of query aligns to 26:272/272 of P04846
Sites not aligning to the query:
3k2dA Crystal structure of immunogenic lipoprotein a from vibrio vulnificus (see paper)
43% identity, 85% coverage: 35:269/276 of query aligns to 8:237/237 of 3k2dA
4ib2A Crystal structure of a putative lipoprotein (rumgna_00858) from ruminococcus gnavus atcc 29149 at 1.76 a resolution
37% identity, 87% coverage: 33:273/276 of query aligns to 6:244/247 of 4ib2A
1xs5A The crystal structure of lipoprotein tp32 from treponema pallidum (see paper)
35% identity, 88% coverage: 32:274/276 of query aligns to 2:238/240 of 1xs5A
6dzxA Crystal structure of the n. Meningitides methionine-binding protein in its d-methionine bound conformation. (see paper)
37% identity, 86% coverage: 35:270/276 of query aligns to 2:231/240 of 6dzxA
3gxaC Crystal structure of gna1946 (see paper)
38% identity, 86% coverage: 35:270/276 of query aligns to 3:232/244 of 3gxaC
4oteB Crystal structure of a putative lipoprotein (cd630_1653) from clostridium difficile 630 at 2.20 a resolution
33% identity, 89% coverage: 32:276/276 of query aligns to 3:240/240 of 4oteB
1p99A 1.7a crystal structure of protein pg110 from staphylococcus aureus (see paper)
35% identity, 86% coverage: 35:271/276 of query aligns to 2:236/255 of 1p99A
6jf1A Crystal structure of the substrate binding protein of a methionine transporter from streptococcus pneumoniae (see paper)
36% identity, 83% coverage: 41:270/276 of query aligns to 21:254/260 of 6jf1A
Sites not aligning to the query:
4ntlA Crystal structure of a lipoprotein, yaec family (ef3198) from enterococcus faecalis v583 at 1.80 a resolution
32% identity, 89% coverage: 32:276/276 of query aligns to 1:242/242 of 4ntlA
>HSERO_RS23780 FitnessBrowser__HerbieS:HSERO_RS23780
MKSIAATWLRRLSTLMVSMLASLVLNAQAAADQVIRVGVTSGPHAQIFEQARRVFERDNP
GYKVKIIEFNDYIQPNAALDAGELDANSYQHRPFLNAQIKTRGYKLYAEGKTMIGPMAIY
SRKYRKLEDVPVGARIGIPNDPANESRVLLLLQKHGFIKLRAGIDPLTGTNATPIDITEN
PKKWKFVEIDAAQLPRTLDDLDASAVNADYAAKAGLNPARDSLVVESGDSPYACLIAVRE
KDRAQPWLGKLVQAYQSPEVKRYIETEFKGGILAAW
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory