SitesBLAST – Find functional sites

 

SitesBLAST

Comparing IAI47_12665 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

6h4nv Ribosome hibernation promoting factor (see paper)
78% identity, 100% coverage: 1:55/55 of query aligns to 1:55/55 of 6h4nv

query
sites
6h4nv
M
 
M
K
 
K
R
|
R
Q
 
Q
K
|
K
R
 
R
D
 
D
R
|
R
L
 
L
E
 
E
R
|
R
A
 
A
H
 
H
S
x
Q
R
|
R
G
 
G
Y
 
Y
Q
|
Q
A
 
A
G
 
G
I
 
I
T
 
A
G
 
G
R
|
R
S
|
S
K
|
K
E
 
E
M
 
M
C
 
C
P
 
P
Y
|
Y
Q
|
Q
L
 
T
I
 
L
D
 
N
A
 
Q
K
 
R
S
 
S
H
 
Q
W
 
W
L
 
L
G
 
G
G
 
G
W
 
W
R
|
R
Q
 
E
A
 
A
M
|
M
E
 
A
D
 
D
R
|
R
S
 
V
V
 
V
A
 
M
A
 
A

Query Sequence

>IAI47_12665
MKRQKRDRLERAHSRGYQAGITGRSKEMCPYQLIDAKSHWLGGWRQAMEDRSVAA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory