SitesBLAST – Find functional sites

 

SitesBLAST

Comparing MCAODC_24440 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P0ACG4 Toxic protein HokC; Protein Gef from Escherichia coli (strain K12) (see paper)
80% identity, 71% coverage: 20:69/70 of query aligns to 1:50/50 of P0ACG4

query
sites
P0ACG4
M
 
M
K
 
K
Q
 
Q
Q
 
H
K
 
K
A
 
A
M
 
M
L
 
I
I
 
V
A
 
A
L
 
L
I
 
I
V
 
V
I
 
I
C
|
C
L
 
I
T
 
T
V
 
A
I
 
V
V
 
V
T
 
A
A
 
A
L
 
L
V
 
V
T
|
T
R
 
R
K
 
K
D
 
D
L
|
L
C
|
C
E
 
E
V
 
V
R
 
H
V
 
I
R
 
R
T
 
T
G
 
G
Q
 
Q
T
 
T
E
 
E
V
|
V
A
 
A
V
 
V
F
 
F
T
 
T
A
 
A
Y
 
Y
E
 
E
P
x
S
E
 
E

Query Sequence

>MCAODC_24440
MNGKSRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRVRTGQTEV
AVFTAYEPEE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory