SitesBLAST – Find functional sites

 

SitesBLAST

Comparing N515DRAFT_0113 FitnessBrowser__Dyella79:N515DRAFT_0113 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 5 hits to proteins with known functional sites (download)

1nsjA Crystal structure of phosphoribosyl anthranilate isomerase from thermotoga maritima (see paper)
43% identity, 99% coverage: 1:202/204 of query aligns to 1:203/205 of 1nsjA

query
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1nsjA
M
 
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1lbmA Crystal structure of phosphoribosyl anthranilate isomerase (prai) in complex with reduced 1-(o-carboxyphenylamino)-1-deoxyribulose 5- phosphate (rcdrp) (see paper)
41% identity, 98% coverage: 1:199/204 of query aligns to 1:189/194 of 1lbmA

query
sites
1lbmA
M
 
M
T
 
V
R
 
R
I
 
V
K
 
K
C
 
I
C
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C
G
 
G
M
 
I
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N
M
 
L
E
 
E
D
 
D
A
 
A
L
 
L
L
 
F
A
 
S
A
 
V
Q
 
E
Y
 
S
G
 
G
A
 
A
D
 
D
A
 
A
I
 
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G
V
 
F
I
 
V
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F
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Y
A
 
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K
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Y
V
 
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S
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P
A
 
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A
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H
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1piiA Three-dimensional structure of the bifunctional enzyme phosphoribosylanthranilate isomerase: indoleglycerolphosphate synthase from escherichia coli refined at 2.0 angstroms resolution (see paper)
33% identity, 97% coverage: 5:202/204 of query aligns to 258:450/452 of 1piiA

query
sites
1piiA
K
 
K
C
 
V
C
|
C
G
 
G
M
 
L
T
 
T
R
 
R
M
 
G
E
 
Q
D
 
D
A
 
A
L
 
K
L
 
A
A
 
A
A
 
Y
Q
 
D
Y
 
A
G
 
G
A
 
A
D
 
I
A
 
Y
I
 
G
G
 
G
V
 
L
I
 
I
F
 
F
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A
 
A
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S
 
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R
 
R
R
 
C
V
 
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N
I
 
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E
D
 
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A
 
A
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Q
A
 
E
I
 
V
C
 
M
A
 
A
E
 
A
L
 
A
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P
P
 
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F
 
-
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L
S
 
Q
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Y
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V
A
 
G
L
 
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F
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N
D
 
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D
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I
A
 
A
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Q
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E
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A
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I
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N
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-
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-
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-
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G
E
 
Q
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L
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G
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N
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V
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L
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L
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A
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L
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G
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A
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D
N
 
N
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E
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A
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Q
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A
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-
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G
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D
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F
S
x
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E
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I
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A
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A
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S
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V
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F
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Q
A
 
T
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L
R
 
R

Sites not aligning to the query:

7etyA Crystal structure of bifunctional indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase (trpc) from corynebacterium glutamicum in complex with reduced 1-(o-carboxyphenylamino)-1- deoxyribulose 5-phosphate (rcdrp) (see paper)
42% identity, 32% coverage: 123:187/204 of query aligns to 385:444/470 of 7etyA

query
sites
7etyA
L
 
L
L
 
I
L
 
L
D
|
D
G
 
A
H
 
H
G
 
-
L
 
-
G
 
-
E
 
-
A
 
E
G
|
G
G
|
G
S
 
S
G
|
G
K
 
E
A
 
V
F
 
F
D
 
D
W
 
W
S
 
A
L
 
T
M
 
V
P
 
P
A
 
A
D
 
A
L
 
V
A
 
K
Q
 
A
P
 
K
L
 
S
I
 
L
L
 
L
A
 
A
G
 
G
G
|
G
L
 
I
T
 
S
A
 
P
D
 
D
N
 
N
V
 
A
A
 
A
H
 
Q
A
 
A
V
 
L
R
 
A
V
 
V
A
 
G
R
 
C
P
 
A
W
 
-
A
 
G
V
 
L
D
|
D
V
 
I
S
x
N
S
|
S
G
 
G
I
 
V
E
 
E
S
 
Y
A
 
P
P
 
A
G
 
G

Sites not aligning to the query:

7etxA Crystal structure of bifunctional indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase (trpc) from corynebacterium glutamicum (see paper)
42% identity, 32% coverage: 123:187/204 of query aligns to 387:446/472 of 7etxA

query
sites
7etxA
L
 
L
L
 
I
L
 
L
D
 
D
G
 
A
H
 
H
G
 
-
L
 
-
G
 
-
E
 
-
A
 
E
G
 
G
G
 
G
S
 
S
G
 
G
K
 
E
A
 
V
F
 
F
D
 
D
W
 
W
S
 
A
L
 
T
M
 
V
P
 
P
A
 
A
D
 
A
L
 
V
A
 
K
Q
 
A
P
 
K
L
 
S
I
 
L
L
 
L
A
 
A
G
 
G
G
 
G
L
 
I
T
 
S
A
 
P
D
 
D
N
 
N
V
 
A
A
 
A
H
 
Q
A
 
A
V
 
L
R
 
A
V
 
V
A
 
G
R
 
C
P
 
A
W
 
-
A
 
G
V
 
L
D
 
D
V
 
I
S
 
N
S
 
S
G
 
G
I
 
V
E
 
E
S
 
Y
A
 
P
P
 
A
G
 
G

Sites not aligning to the query:

Query Sequence

>N515DRAFT_0113 FitnessBrowser__Dyella79:N515DRAFT_0113
MTRIKCCGMTRMEDALLAAQYGADAIGVIFTARSRRRVDIADARAICAELPPFVSTVALF
MDDEPAYVREVLREVQPDLLQFHGDESDEWCAQFGHRYLKAIAMGEGAAALPRLRAYPRA
AGLLLDGHGLGEAGGSGKAFDWSLMPADLAQPLILAGGLTADNVAHAVRVARPWAVDVSS
GIESAPGIKDAAKMHAFIEAVRQA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory