SitesBLAST – Find functional sites

 

SitesBLAST

Comparing N515DRAFT_1222 N515DRAFT_1222 MFS transporter, FHS family, L-fucose permease to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

P11551 L-fucose-proton symporter; 6-deoxy-L-galactose permease; L-fucose permease; L-fucose-H(+) symport protein from Escherichia coli (strain K12) (see 3 papers)
49% identity, 98% coverage: 6:417/422 of query aligns to 15:432/438 of P11551

query
sites
P11551
S
 
D
R
 
K
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D
A
 
A
G
 
G
R
 
Q
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S
P
 
R
-
 
S
-
 
Y
-
 
I
L
 
I
P
 
P
L
 
F
A
 
A
L
 
L
I
 
L
V
 
C
S
 
S
L
 
L
F
 
F
F
 
F
L
 
L
W
|
W
G
 
A
V
 
V
A
 
A
N
 
N
N
 
N
L
 
L
N
 
N
D
|
D
V
 
I
L
 
L
I
 
L
P
 
P
Q
 
Q
F
 
F
K
 
Q
K
 
Q
A
 
A
F
 
F
V
 
T
L
 
L
N
 
T
D
 
N
F
 
F
Q
 
Q
A
 
A
G
 
G
L
 
L
V
 
I
Q
 
Q
S
 
S
A
 
A
F
 
F
Y
 
Y
L
 
F
G
 
G
Y
 
Y
F
 
F
L
 
I
V
 
I
A
 
P
M
 
I
P
 
P
A
 
A
G
 
G
I
 
I
Y
 
L
M
 
M
R
 
K
R
 
K
F
 
L
G
 
S
Y
 
Y
K
 
K
S
 
A
A
 
G
V
 
I
V
 
I
F
 
T
G
 
G
L
 
L
A
 
F
L
 
L
Y
 
Y
G
 
A
L
 
L
G
 
G
A
 
A
L
 
A
L
 
L
F
 
F
W
 
W
P
 
P
A
 
A
A
 
A
Q
 
E
Q
 
I
G
 
M
T
 
N
Y
 
Y
G
 
T
F
 
L
F
 
F
L
 
L
F
 
V
A
 
G
L
 
L
F
 
F
V
 
I
I
 
I
A
 
A
S
 
A
G
 
G
L
 
L
A
 
G
F
 
C
L
 
L
E
|
E
T
 
T
S
 
A
A
 
A
N
 
N
P
 
P
F
 
F
V
 
V
T
 
T
L
 
V
L
 
L
G
 
G
P
 
P
R
 
E
E
 
S
S
 
S
A
 
G
A
 
H
R
 
F
R
 
R
L
 
L
N
 
N
L
 
L
A
 
A
Q
 
Q
A
 
T
F
 
F
N
 
N
P
 
S
L
 
F
G
 
G
S
 
A
I
 
I
T
 
I
G
 
A
I
 
V
L
 
V
I
 
F
G
 
G
Q
 
Q
H
 
S
F
 
L
I
 
I
F
 
L
S
 
S
G
 
N
V
 
V
E
 
P
H
 
H
T
 
Q
P
 
S
E
 
Q
Q
 
D
-
 
V
L
 
L
A
 
D
A
 
K
L
 
M
S
 
S
A
 
P
A
 
E
E
 
Q
R
 
L
A
 
S
A
 
A
F
 
Y
V
 
K
A
 
H
H
 
S
E
 
L
T
 
V
A
 
L
A
 
S
V
 
V
Q
 
Q
L
 
T
P
 
P
Y
 
Y
L
 
M
A
 
I
I
 
I
G
 
V
L
 
A
V
 
I
V
 
V
L
 
L
A
 
L
W
 
V
G
 
A
L
 
L
L
 
L
I
 
I
L
 
M
L
 
L
T
 
T
R
 
K
F
 
F
P
 
P
A
 
A
V
 
L
H
 
Q
A
 
S
V
 
D
E
 
N
E
 
H
G
 
S
A
 
D
V
 
A
P
 
K
R
 
Q
D
 
G
-
 
S
-
 
F
H
 
S
G
 
A
A
 
S
L
 
L
A
 
S
R
 
R
L
 
L
L
 
A
G
 
R
D
 
I
R
 
R
R
 
H
F
 
W
L
 
R
A
 
W
T
 
A
L
 
V
A
 
L
A
 
A
Q
 
Q
F
 
F
F
 
C
Y
 
Y
V
 
V
G
 
G
A
 
A
Q
 
Q
V
 
T
G
 
A
V
 
C
W
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W
S
 
S
Y
 
Y
L
 
L
I
 
I
R
 
R
Y
 
Y
V
 
A
Q
 
V
A
 
E
T
 
E
M
 
I
P
 
P
G
 
G
T
 
M
P
 
T
A
 
A
K
 
G
L
 
F
A
 
A
A
 
A
N
 
N
Y
 
Y
M
 
L
L
 
T
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G
S
 
T
L
 
M
A
 
V
C
 
C
F
 
F
M
 
F
A
 
I
G
 
G
R
 
R
F
 
F
A
 
T
G
 
G
S
 
T
A
 
W
L
 
L
M
 
I
R
 
S
Y
 
R
V
 
F
A
 
A
P
 
P
R
 
H
R
 
K
L
 
V
L
 
L
A
 
A
L
 
A
F
 
Y
A
 
A
A
 
L
V
 
I
N
 
A
V
 
M
A
 
A
L
 
L
T
 
C
V
 
L
F
 
I
A
 
S
V
 
A
A
 
F
V
 
A
P
 
G
G
 
G
V
 
H
A
 
V
G
 
G
A
 
L
C
 
I
A
 
A
L
 
L
V
 
T
A
 
L
C
 
C
S
 
S
F
 
A
F
 
F
M
 
M
S
 
S
V
 
I
M
 
Q
Y
 
Y
P
 
P
T
 
T
I
 
I
F
 
F
A
 
S
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L
G
 
G
V
 
I
E
 
K
G
 
N
R
 
L
G
 
G
D
 
Q
D
 
D
E
 
T
R
 
-
K
 
K
L
 
Y
G
 
G
S
 
S
A
 
S
L
 
F
L
 
I
V
 
V
M
 
M
T
 
T
I
 
I
I
 
I
G
 
G
G
 
G
A
 
G
V
 
I
L
 
V
T
 
T
A
 
P
A
 
V
M
 
M
G
 
G
A
 
F
V
 
V
S
 
S
D
 
D
A
 
A
A
 
A
G
 
G
-
 
N
I
 
I
S
 
P
R
 
T
A
 
A
M
 
E
L
 
L
V
 
I
P
 
P
A
 
A
A
 
L
S
 
C
F
 
F
V
 
A
V
 
V
I
 
I
L
 
F
L
 
I
F
 
F
A
 
A
R
 
R
L
 
F
R
 
R

Sites not aligning to the query:

Query Sequence

>N515DRAFT_1222 N515DRAFT_1222 MFS transporter, FHS family, L-fucose permease
MAASSSRAAGRSPLPLALIVSLFFLWGVANNLNDVLIPQFKKAFVLNDFQAGLVQSAFYL
GYFLVAMPAGIYMRRFGYKSAVVFGLALYGLGALLFWPAAQQGTYGFFLFALFVIASGLA
FLETSANPFVTLLGPRESAARRLNLAQAFNPLGSITGILIGQHFIFSGVEHTPEQLAALS
AAERAAFVAHETAAVQLPYLAIGLVVLAWGLLILLTRFPAVHAVEEGAVPRDHGALARLL
GDRRFLATLAAQFFYVGAQVGVWSYLIRYVQATMPGTPAKLAANYMLVSLACFMAGRFAG
SALMRYVAPRRLLALFAAVNVALTVFAVAVPGVAGACALVACSFFMSVMYPTIFALGVEG
RGDDERKLGSALLVMTIIGGAVLTAAMGAVSDAAGISRAMLVPAASFVVILLFARLRGAV
ER

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory