Comparing N515DRAFT_1222 N515DRAFT_1222 MFS transporter, FHS family, L-fucose permease to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
P11551 L-fucose-proton symporter; 6-deoxy-L-galactose permease; L-fucose permease; L-fucose-H(+) symport protein from Escherichia coli (strain K12) (see 3 papers)
49% identity, 98% coverage: 6:417/422 of query aligns to 15:432/438 of P11551
Sites not aligning to the query:
>N515DRAFT_1222 N515DRAFT_1222 MFS transporter, FHS family, L-fucose permease
MAASSSRAAGRSPLPLALIVSLFFLWGVANNLNDVLIPQFKKAFVLNDFQAGLVQSAFYL
GYFLVAMPAGIYMRRFGYKSAVVFGLALYGLGALLFWPAAQQGTYGFFLFALFVIASGLA
FLETSANPFVTLLGPRESAARRLNLAQAFNPLGSITGILIGQHFIFSGVEHTPEQLAALS
AAERAAFVAHETAAVQLPYLAIGLVVLAWGLLILLTRFPAVHAVEEGAVPRDHGALARLL
GDRRFLATLAAQFFYVGAQVGVWSYLIRYVQATMPGTPAKLAANYMLVSLACFMAGRFAG
SALMRYVAPRRLLALFAAVNVALTVFAVAVPGVAGACALVACSFFMSVMYPTIFALGVEG
RGDDERKLGSALLVMTIIGGAVLTAAMGAVSDAAGISRAMLVPAASFVVILLFARLRGAV
ER
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory