SitesBLAST – Find functional sites

 

SitesBLAST

Comparing N515DRAFT_1256 FitnessBrowser__Dyella79:N515DRAFT_1256 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

1sz2B Crystal structure of e. Coli glucokinase in complex with glucose (see paper)
29% identity, 95% coverage: 11:323/330 of query aligns to 5:312/320 of 1sz2B

query
sites
1sz2B
L
 
L
A
 
V
A
 
G
D
 
D
V
 
V
G
 
G
G
 
G
T
 
T
H
 
N
A
 
A
R
 
R
L
 
L
A
 
A
L
 
L
M
 
C
A
 
-
P
 
-
G
 
-
N
 
D
R
 
I
G
 
A
G
 
S
G
 
G
P
 
E
V
 
I
V
 
S
Q
 
Q
A
 
A
Y
 
-
R
 
K
I
 
T
F
 
Y
R
 
S
C
 
G
G
 
L
E
 
D
H
 
Y
A
 
P
S
 
S
F
 
L
A
 
E
A
 
A
I
 
V
V
 
I
R
 
R
A
 
V
F
 
Y
L
 
L
D
 
E
G
 
E
L
 
H
G
 
K
S
 
V
R
 
E
P
 
V
R
 
K
E
 
D
-
 
G
-
 
C
L
 
I
V
 
A
L
 
I
A
 
A
C
|
C
T
x
P
G
 
I
C
 
T
A
 
G
H
 
D
E
 
W
G
 
V
V
 
A
L
 
M
I
 
T
N
 
N
E
 
H
S
 
T
L
 
-
P
 
-
W
 
W
R
 
A
I
 
F
E
 
S
P
 
I
A
 
A
A
 
E
L
 
M
A
 
K
A
 
K
E
 
N
L
 
L
R
 
G
L
 
F
D
 
S
E
 
H
V
 
L
H
 
E
L
 
I
L
 
I
N
|
N
D
|
D
F
 
F
V
 
T
A
 
A
L
 
V
T
 
S
H
 
M
A
 
A
A
 
I
P
 
P
Y
 
M
I
 
L
D
 
K
T
 
-
A
 
-
R
 
K
S
 
E
P
 
H
L
 
L
L
 
I
H
 
Q
A
 
F
P
 
G
A
 
G
R
 
A
A
 
E
A
 
P
S
 
V
A
 
E
P
 
G
G
 
K
P
 
P
I
 
I
V
 
A
V
 
V
V
 
Y
G
 
G
P
 
A
G
 
G
T
 
T
G
 
G
L
|
L
G
|
G
A
 
V
A
 
A
V
 
H
R
 
L
L
 
V
P
 
H
G
 
V
S
 
D
P
 
K
S
 
R
-
 
W
V
 
V
V
 
S
L
 
L
P
 
P
S
 
G
E
|
E
A
 
G
G
 
G
Q
x
H
M
 
V
Q
 
D
L
 
F
A
 
A
A
 
P
R
 
N
V
 
S
G
 
E
R
 
E
E
 
E
Q
 
A
D
 
I
V
 
I
M
 
L
R
 
E
L
 
I
L
 
L
A
 
R
G
 
A
R
 
E
D
 
I
T
 
G
H
 
H
I
 
V
S
 
S
Y
 
A
E
|
E
A
 
R
V
 
V
L
 
L
S
 
S
G
 
G
P
 
P
G
 
G
V
 
L
L
 
V
R
 
N
V
 
L
Y
 
Y
E
 
R
A
 
A
L
 
I
C
 
V
R
 
K
E
 
A
Q
 
D
G
 
N
K
 
R
V
 
L
P
 
P
A
 
E
C
 
N
A
 
L
E
 
K
P
 
P
A
 
K
A
 
D
V
 
I
T
 
T
A
 
E
A
 
R
A
 
A
I
 
L
E
 
A
G
 
D
S
 
S
D
 
C
P
 
T
R
 
D
A
 
C
R
 
R
E
 
R
T
 
A
L
 
L
D
 
S
L
 
L
F
 
F
C
 
C
G
 
V
W
 
I
L
 
M
G
 
G
S
 
R
F
 
F
A
 
G
G
 
G
D
 
N
L
 
L
A
 
A
M
 
L
L
 
N
Y
 
L
Q
 
G
A
 
T
T
 
F
G
 
G
G
 
G
I
 
V
Y
 
F
L
 
I
A
 
A
G
 
G
G
 
G
F
 
I
L
 
V
S
 
P
R
 
R
L
 
F
A
 
L
G
 
E
Y
 
F
V
 
F
R
 
K
G
 
A
S
 
S
S
 
G
F
 
F
L
 
R
E
 
A
R
 
A
F
 
F
L
 
E
D
 
D
K
 
K
G
 
G
V
 
R
M
 
F
R
 
K
P
 
E
F
 
Y
L
 
V
D
 
H
N
 
D
V
 
I
P
 
P
V
 
V
R
 
Y
V
 
L
V
 
I
D
 
V
H
 
H
G
 
D
Q
 
N
L
 
P
G
 
G
V
 
L
I
 
L
G
 
G
A
 
S
A
 
G
S
 
A
W
 
H
L
 
L

Query Sequence

>N515DRAFT_1256 FitnessBrowser__Dyella79:N515DRAFT_1256
MTAHASRRPFLAADVGGTHARLALMAPGNRGGGPVVQAYRIFRCGEHASFAAIVRAFLDG
LGSRPRELVLACTGCAHEGVLINESLPWRIEPAALAAELRLDEVHLLNDFVALTHAAPYI
DTARSPLLHAPARAASAPGPIVVVGPGTGLGAAVRLPGSPSVVLPSEAGQMQLAARVGRE
QDVMRLLAGRDTHISYEAVLSGPGVLRVYEALCREQGKVPACAEPAAVTAAAIEGSDPRA
RETLDLFCGWLGSFAGDLAMLYQATGGIYLAGGFLSRLAGYVRGSSFLERFLDKGVMRPF
LDNVPVRVVDHGQLGVIGAASWLLDRPANR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory