SitesBLAST – Find functional sites

 

SitesBLAST

Comparing N515DRAFT_1317 FitnessBrowser__Dyella79:N515DRAFT_1317 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
57% identity, 88% coverage: 31:259/260 of query aligns to 15:240/240 of 4qhzC

query
sites
4qhzC
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L
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D
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D
L
 
L
D
 
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A
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W
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E
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V
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K
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G
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G
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A
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-
A
 
A
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E
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D
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V
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H
D
 
D
G
 
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N
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S
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-
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D
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C
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N
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N
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E
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L

Query Sequence

>N515DRAFT_1317 FitnessBrowser__Dyella79:N515DRAFT_1317
MTARLALALLPFALATGVAMAQNAPPAGDPKATEQWEPVPPVVTPGQRDAAPPSDAIVLF
DGHQLDQWEASKDHSPAHWKVHDGVMTVDKTTGNIQTKRRFRNYQLHLEWQVPKNISGEG
QARGNSGVFVASTGPGDEGYEVQILDSYRNKTYVNGQAAAIYKQTPPLANAMRPPGEWQA
YDIVWTAPVFAADGSVQSPAYVTLFHNGIVVQNHTRLTGETLYIGKPVYKAYTDAPIKLQ
AHGDPSAPISFRNIWVRPLD

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory