Comparing N515DRAFT_1539 FitnessBrowser__Dyella79:N515DRAFT_1539 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 9 hits to proteins with known functional sites (download)
6b2wA C. Jejuni c315s agmatine deiminase with substrate bound (see paper)
32% identity, 96% coverage: 3:333/345 of query aligns to 8:322/333 of 6b2wA
Sites not aligning to the query:
G7JT50 Agmatine deiminase; Agmatine iminohydrolase; MtAIH; EC 3.5.3.12 from Medicago truncatula (Barrel medic) (Medicago tribuloides) (see paper)
30% identity, 97% coverage: 6:341/345 of query aligns to 13:373/374 of G7JT50
6nicD Crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide (see paper)
30% identity, 97% coverage: 6:341/345 of query aligns to 3:359/360 of 6nicD
Q837U5 Putative agmatine deiminase; Agmatine iminohydrolase; EC 3.5.3.12 from Enterococcus faecalis (strain ATCC 700802 / V583) (see paper)
29% identity, 97% coverage: 6:340/345 of query aligns to 15:363/365 of Q837U5
3h7cX Crystal structure of arabidopsis thaliana agmatine deiminase from cell free expression
31% identity, 97% coverage: 8:341/345 of query aligns to 15:366/369 of 3h7cX
Q8GWW7 Agmatine deiminase; Agmatine iminohydrolase; Protein EMBRYO DEFECTIVE 1873; EC 3.5.3.12 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
30% identity, 97% coverage: 8:341/345 of query aligns to 15:373/383 of Q8GWW7
6i0xB Porphyromonas gingivalis peptidylarginine deminase (ppad) mutant g231n/e232t/n235d in complex with cl-amidine. (see paper)
23% identity, 91% coverage: 6:320/345 of query aligns to 12:292/422 of 6i0xB
Sites not aligning to the query:
4ytgA Crystal structure of porphyromonas gingivalis peptidylarginine deiminase (ppad) mutant c351a in complex with dipeptide met-arg. (see paper)
23% identity, 91% coverage: 6:320/345 of query aligns to 12:292/417 of 4ytgA
Sites not aligning to the query:
4ytbA Crystal structure of porphyromonas gingivalis peptidylarginine deiminase (ppad) in complex with dipeptide asp-gln. (see paper)
23% identity, 91% coverage: 6:320/345 of query aligns to 12:292/422 of 4ytbA
Sites not aligning to the query:
>N515DRAFT_1539 FitnessBrowser__Dyella79:N515DRAFT_1539
MSHATLRLPAEWEPQSAVLIAWPHADTDWADRLAEVETTYVALAAAVTRFEPLIVVVADA
ELRAHVEGKLREAGVDLGRVRLIELPYDDTWLRDSGPITLKDDRGAFQLTDFRFTGWGGK
FGAEQDDALVAGLVKAGVFGRAAHRRIDWALEGGGIESDGAGTVLTTWRCLVQRHPEQSR
EEMSAILRDGLHASRILWLDYGYLEGDDTDAHIDTLARFAPDGRIVFQACDDLDDAHHDE
LSRMAGELAALCMADGKPYELYPLPWAKPIVDEGRRLAASYANYLIVNGGVLVPAYGDPA
DDEAARIIGAAHPGREVVQVPCRPLIWQNGSLHCITMQLPAGIYG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory