SitesBLAST
Comparing N515DRAFT_2297 FitnessBrowser__Dyella79:N515DRAFT_2297 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 6 hits to proteins with known functional sites (download)
8jejC Cryo-em structure of na-dithionite reduced membrane-bound fructose dehydrogenase from gluconobacter japonicus
39% identity, 88% coverage: 53:440/441 of query aligns to 1:401/413 of 8jejC
- binding heme c: C13 (= C65), C16 (= C68), H17 (= H69), T42 (= T93), I44 (= I95), F60 (= F111), L64 (= L115), L75 (= L126), Y76 (= Y127), M79 (≠ F130), P80 (= P131), Y84 (= Y135), R122 (= R172), C162 (= C211), C165 (= C214), H166 (= H215), I186 (≠ L235), W189 (= W238), A191 (= A240), P192 (≠ Y241), I194 (= I243), W205 (= W254), Y213 (= Y262), R223 (≠ T273), M228 (= M278), V303 (≠ A348), C304 (= C349), C307 (= C352), H308 (= H353), Y320 (≠ A364), P321 (≠ A365), L323 (= L367), T327 (≠ Q371), T328 (≠ A372), D336 (≠ N380), I341 (= I385), V345 (≠ S389), R347 (≠ L391), I354 (≠ T398), M356 (= M400), F359 (= F403), I376 (≠ L415)
- binding ubiquinone-10: M36 (≠ F87), P77 (= P128), S124 (≠ G174), W128 (= W178), C165 (= C214), L173 (≠ Y222)
Sites not aligning to the query:
7w2jC Cryo-em structure of membrane-bound fructose dehydrogenase from gluconobacter japonicus
40% identity, 88% coverage: 53:440/441 of query aligns to 1:387/418 of 7w2jC
- binding heme c: C13 (= C65), C16 (= C68), H17 (= H69), T42 (= T93), I44 (= I95), Y55 (≠ W106), L75 (= L126), Y76 (= Y127), A78 (= A129), M79 (≠ F130), R122 (= R172), H161 (= H210), C162 (= C211), C165 (= C214), H166 (= H215), A191 (= A240), P192 (≠ Y241), R223 (≠ T273), P227 (= P277), M228 (= M278), V289 (≠ A348), C290 (= C349), C293 (= C352), H294 (= H353), Y305 (≠ E363), Y306 (≠ A364), P307 (≠ A365), L309 (= L367), N312 (≠ T370), T313 (≠ Q371), T314 (≠ A372), D322 (≠ N380), I327 (= I385), V331 (≠ S389), R333 (≠ L391), I340 (≠ T398), M342 (= M400), P343 (= P401), F345 (= F403)
8gy3A Cryo-em structure of membrane-bound aldehyde dehydrogenase from gluconobacter oxydans
35% identity, 93% coverage: 9:419/441 of query aligns to 4:407/440 of 8gy3A
- binding heme c: Y52 (≠ D64), C53 (= C65), C56 (= C68), H57 (= H69), S84 (≠ T93), I86 (= I95), W97 (= W106), F102 (= F111), L117 (= L126), F121 (= F130), F126 (≠ Y135), R163 (= R172), C203 (= C211), C206 (= C214), H207 (= H215), A232 (= A240), P233 (≠ Y241), L235 (≠ I243), W245 (= W254), Y253 (= Y262), L254 (= L263), G263 (= G272), S264 (≠ T273), M269 (= M278), Y292 (≠ L301), C337 (= C349), C340 (= C352), H341 (= H353), P353 (≠ A365), L355 (= L367), N358 (≠ T370), N359 (≠ Q371), V372 (= V384), I377 (≠ S389), G382 (≠ A394), Q383 (≠ H395), I386 (≠ T398), M388 (= M400), F391 (= F403)
- binding ubiquinone-10: E55 (≠ A67), T76 (≠ M85), F78 (= F87), Y118 (= Y127), P119 (= P128), I160 (≠ F169), G166 (= G174), Q167 (≠ L175), F169 (≠ V177), W170 (= W178), H202 (= H210), R210 (= R218), L213 (≠ M221)
Q47945 Alcohol dehydrogenase (quinone), cytochrome c subunit; ADH; Alcohol dehydrogenase (quinone), subunit II; Cytochrome c-553; Cytochrome c553; Ethanol:Q2 reductase; G3-ADH subunit II; Quinohemoprotein-cytochrome c complex; Ubiquinol oxidase; EC 1.1.5.5 from Gluconobacter oxydans (strain 621H) (Gluconobacter suboxydans) (see paper)
33% identity, 88% coverage: 53:439/441 of query aligns to 44:434/478 of Q47945
Sites not aligning to the query:
- 1:36 signal peptide
- 37 modified: Pyrrolidone carboxylic acid
8gy2B Cryo-em structure of membrane-bound alcohol dehydrogenase from gluconobacter oxydans
33% identity, 88% coverage: 53:439/441 of query aligns to 6:396/433 of 8gy2B
- binding heme c: C18 (= C65), C21 (= C68), H22 (= H69), T46 (= T93), I48 (= I95), Y59 (≠ W106), L68 (= L115), R73 (= R120), V79 (≠ L126), Y80 (= Y127), M83 (≠ F130), F88 (≠ Y135), R126 (= R172), H165 (= H210), C166 (= C211), C169 (= C214), H170 (= H215), I201 (≠ K239), A202 (= A240), P203 (≠ Y241), L205 (≠ I243), W216 (= W254), F224 (≠ Y262), A234 (≠ G272), V235 (≠ T273), F236 (≠ A274), F236 (≠ A274), M239 (= M278), N301 (≠ A348), C302 (= C349), C305 (= C352), H306 (= H353), M316 (≠ E363), F317 (≠ A364), P318 (≠ A365), L320 (= L367), P324 (≠ Q371), G342 (≠ S389), S352 (≠ G396), V354 (≠ T398), M356 (= M400), F359 (= F403), M375 (≠ V419)
- binding ubiquinone-10: C21 (= C68), L34 (≠ V81), P39 (= P86), P81 (= P128), L129 (= L175), W132 (= W178), E168 (= E213), R173 (= R218), I197 (≠ L235), D241 (≠ E280)
Sites not aligning to the query:
8hddB Complex structure of catalytic, small, and a partial electron transfer subunits from burkholderia cepacia fad glucose dehydrogenase
34% identity, 27% coverage: 321:439/441 of query aligns to 13:121/121 of 8hddB
- binding protoporphyrin ix containing fe: C30 (= C349), C33 (= C352), H34 (= H353), Y46 (≠ A365), P47 (≠ A366), T54 (= T370), V66 (= V384), I67 (= I385), R73 (≠ L391), I80 (≠ T398), M82 (= M400), P83 (= P401)
Query Sequence
>N515DRAFT_2297 FitnessBrowser__Dyella79:N515DRAFT_2297
MKLVRMILALIAIVVVGAAAFTAYAWFIVGDGKETGAPQPAAAGAPASLTDPVARGEYLT
RAADCAACHTVPGGQPYTGGVAFKMPFGTIYSTNITADKETGIGDWSDDEFVRALHAGVR
KDGKPLYPAFPYTSYTALSRDDVLAIKAYLFSLPPKHAPARPNELSFPFDQRWGLSVWNA
LFLKKQRYEPVQGKSQAWNRGAYLATALGHCDECHTPRNAMYALKRGDALSGEVLQGWKA
YNITSDKTYGIGNWSEQQLADYLSKGHASGRGTASGPMGEVVQYSLQYLTPEDIGALVTY
LREVKPQQGSAGSEVNDRPALALASSASAPGAEELAQGGLGQHLFQGACSSCHLWNGQGR
QSEAAALLGTQAANDPQAHNLTQVILQGSTLRTAHGETSMPSFGQAYTDAEVAALGNFVL
THFGGKPATLTADEVAKRRAP
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory