SitesBLAST – Find functional sites

 

SitesBLAST

Comparing N515DRAFT_2652 FitnessBrowser__Dyella79:N515DRAFT_2652 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

1sz2B Crystal structure of e. Coli glucokinase in complex with glucose (see paper)
29% identity, 87% coverage: 34:342/355 of query aligns to 5:310/320 of 1sz2B

query
sites
1sz2B
L
 
L
A
 
V
A
 
G
D
 
D
I
 
V
G
 
G
G
 
G
T
 
T
H
 
N
A
 
A
R
 
R
L
 
L
G
 
A
L
 
L
V
 
C
A
 
D
A
 
I
Q
 
-
P
 
-
E
 
-
G
 
A
A
 
S
P
 
G
R
 
E
V
 
I
L
 
S
A
 
Q
Y
 
A
R
 
K
S
 
T
F
 
Y
R
 
S
C
 
G
A
 
L
D
 
D
H
 
Y
P
 
P
H
 
S
L
 
L
D
 
E
D
 
A
I
 
V
V
 
I
R
 
R
M
 
V
F
 
Y
C
 
L
A
 
E
E
 
E
L
 
H
D
 
K
A
 
V
R
 
E
P
 
V
R
 
K
E
 
D
L
 
G
V
 
C
L
 
I
A
 
A
S
 
I
A
 
A
G
x
C
Y
x
P
L
 
I
H
 
T
A
 
G
G
 
D
V
 
W
V
 
V
V
 
A
N
 
M
R
 
T
N
 
N
L
 
H
A
 
T
W
 
W
P
 
A
L
 
F
V
 
S
P
 
I
A
 
A
T
 
E
L
 
M
A
 
K
H
 
K
E
 
N
L
 
L
R
 
G
L
 
F
E
 
S
R
 
H
V
 
L
R
 
E
F
 
I
L
 
I
N
|
N
D
|
D
F
 
F
E
 
T
A
 
A
L
 
V
A
 
S
H
 
M
A
 
A
I
 
I
A
 
P
Y
 
M
V
 
L
D
 
K
E
 
K
H
 
E
S
 
H
S
 
L
V
 
I
S
 
Q
L
 
F
K
 
G
T
 
G
A
 
A
F
 
-
A
 
E
P
 
P
D
 
V
A
 
E
G
 
G
K
 
K
G
 
-
P
 
P
I
 
I
A
 
A
V
 
V
I
 
Y
G
 
G
P
 
A
G
 
G
T
 
T
G
 
G
L
|
L
G
|
G
A
 
V
A
 
A
V
 
H
W
 
L
F
 
V
P
 
H
G
 
V
E
 
D
P
 
K
P
 
R
R
 
W
V
 
V
-
 
S
I
 
L
A
 
P
T
 
G
E
|
E
A
 
G
G
 
G
Q
x
H
I
 
V
Q
 
D
L
 
F
A
 
A
A
 
P
R
 
N
G
 
S
G
 
E
L
 
E
E
 
E
R
 
A
E
 
I
V
 
I
L
 
L
D
 
E
R
 
I
I
 
L
A
 
R
P
 
A
S
 
E
D
 
I
C
 
G
H
 
H
T
 
V
P
 
S
Y
 
A
E
|
E
A
 
R
V
 
V
L
 
L
S
 
S
G
 
G
P
 
P
G
 
G
L
 
L
H
 
V
R
 
N
L
 
L
Y
 
Y
A
 
R
A
 
A
L
 
I
C
 
V
A
 
K
V
 
A
Y
 
D
D
 
N
R
 
R
Y
 
L
P
 
P
S
 
E
C
 
N
A
 
L
E
 
K
P
 
P
A
 
K
D
 
D
V
 
I
V
 
T
A
 
E
A
 
R
A
 
A
E
 
L
A
 
A
G
 
D
D
 
S
E
 
C
V
 
T
-
 
D
A
 
C
Y
 
R
E
 
R
A
 
A
V
 
L
Q
 
S
M
 
L
F
 
F
G
 
C
G
 
V
W
 
I
M
 
M
G
 
G
S
 
R
F
 
F
A
 
G
G
 
G
D
 
N
L
 
L
A
 
A
M
 
L
L
 
N
Y
 
L
G
 
G
A
 
T
T
 
F
G
 
G
G
 
G
V
 
V
Y
 
F
L
 
I
A
 
A
G
 
G
G
 
G
F
 
I
L
 
V
S
 
P
R
 
R
I
 
F
V
 
L
D
 
E
L
 
F
L
 
F
R
 
K
C
 
A
G
 
S
P
 
G
L
 
F
V
 
R
E
 
A
R
 
A
F
 
F
L
 
E
D
 
D
K
 
K
G
 
G
V
 
R
M
 
F
R
 
K
P
 
E
F
 
Y
L
 
V
H
 
H
K
 
D
V
 
I
P
 
P
I
 
V
R
 
Y
V
 
L
V
 
I
D
 
V
H
 
H
G
 
D
Q
 
N
L
 
P
G
 
G
V
 
L
V
 
L
G
 
G
A
 
S
A
 
G
S
 
A

Query Sequence

>N515DRAFT_2652 FitnessBrowser__Dyella79:N515DRAFT_2652
MTQPASLRNTEADGAVLHLRSSAAHDTDAQRPFLAADIGGTHARLGLVAAQPEGAPRVLA
YRSFRCADHPHLDDIVRMFCAELDARPRELVLASAGYLHAGVVVNRNLAWPLVPATLAHE
LRLERVRFLNDFEALAHAIAYVDEHSSVSLKTAFAPDAGKGPIAVIGPGTGLGAAVWFPG
EPPRVIATEAGQIQLAARGGLEREVLDRIAPSDCHTPYEAVLSGPGLHRLYAALCAVYDR
YPSCAEPADVVAAAEAGDEVAYEAVQMFGGWMGSFAGDLAMLYGATGGVYLAGGFLSRIV
DLLRCGPLVERFLDKGVMRPFLHKVPIRVVDHGQLGVVGAASWHLHTRTATQAPG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory