Comparing N515DRAFT_3118 FitnessBrowser__Dyella79:N515DRAFT_3118 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
Q9KVT3 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
44% identity, 97% coverage: 5:273/276 of query aligns to 7:272/278 of Q9KVT3
3pgjA 2.49 angstrom resolution crystal structure of shikimate 5- dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. N16961 in complex with shikimate
44% identity, 97% coverage: 5:273/276 of query aligns to 3:268/272 of 3pgjA
1nytA Shikimate dehydrogenase aroe complexed with NADP+ (see paper)
45% identity, 97% coverage: 6:274/276 of query aligns to 4:269/271 of 1nytA
P15770 Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Escherichia coli (strain K12) (see paper)
45% identity, 97% coverage: 6:274/276 of query aligns to 4:269/272 of P15770
3sefA 2.4 angstrom resolution crystal structure of shikimate 5-dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. N16961 in complex with shikimate and NADPH
44% identity, 97% coverage: 5:273/276 of query aligns to 3:264/268 of 3sefA
3sefC 2.4 angstrom resolution crystal structure of shikimate 5-dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. N16961 in complex with shikimate and NADPH
41% identity, 97% coverage: 5:273/276 of query aligns to 3:241/244 of 3sefC
P43876 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (see paper)
36% identity, 97% coverage: 6:273/276 of query aligns to 4:269/272 of P43876
1p77A Crystal structure of shikimate dehydrogenase (aroe) from haemophilus influenzae (see paper)
37% identity, 97% coverage: 6:273/276 of query aligns to 4:262/265 of 1p77A
Q5HNV1 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (see paper)
30% identity, 98% coverage: 5:274/276 of query aligns to 2:264/269 of Q5HNV1
3dooA Crystal structure of shikimate dehydrogenase from staphylococcus epidermidis complexed with shikimate (see paper)
29% identity, 98% coverage: 5:274/276 of query aligns to 2:255/258 of 3dooA
P56119 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
31% identity, 100% coverage: 1:275/276 of query aligns to 1:263/263 of P56119
4fosA Crystal structure of shikimate dehydrogenase (aroe) q237a mutant from helicobacter pylori in complex with shikimate
31% identity, 100% coverage: 1:275/276 of query aligns to 1:263/263 of 4fosA
3phjA Shikimate 5-dehydrogenase (aroe) from helicobacter pylori in complex with 3-dehydroshikimate
31% identity, 100% coverage: 1:275/276 of query aligns to 1:255/255 of 3phjA
3phiA Shikimate 5-dehydrogenase (aroe) from helicobacter pylori in complex with shikimate and NADPH
31% identity, 99% coverage: 1:272/276 of query aligns to 1:257/259 of 3phiA
O67049 Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus (strain VF5) (see paper)
29% identity, 92% coverage: 6:259/276 of query aligns to 9:252/269 of O67049
2hk9A Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with shikimate and NADP+ at 2.2 angstrom resolution (see paper)
29% identity, 92% coverage: 6:259/276 of query aligns to 9:252/269 of 2hk9A
2hk9B Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with shikimate and NADP+ at 2.2 angstrom resolution (see paper)
29% identity, 92% coverage: 6:259/276 of query aligns to 9:252/267 of 2hk9B
1nvtB Crystal structure of shikimate dehydrogenase (aroe or mj1084) in complex with NADP+ (see paper)
31% identity, 96% coverage: 6:271/276 of query aligns to 14:281/287 of 1nvtB
1nvtA Crystal structure of shikimate dehydrogenase (aroe or mj1084) in complex with NADP+ (see paper)
31% identity, 96% coverage: 6:271/276 of query aligns to 14:281/287 of 1nvtA
Q58484 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
31% identity, 96% coverage: 6:271/276 of query aligns to 9:276/282 of Q58484
>N515DRAFT_3118 FitnessBrowser__Dyella79:N515DRAFT_3118
MSAAQFAVFGHPIAHSLSPQIHQAFARQFGIALEYRTIDAAPAEFAASVRRFFAAGGRGA
NVTLPHKAAAFELADERSEAAVRVGTANVLTPLPDGRLAAHNTDGAGLVRDLTERHRMDL
RGHDALLLGAGGAARGVAWSLLDAGVRTLTIVNRTPETADALADAIGEPARAHTRYWEDL
DDIGSFDLIINATSAGVLGKPLDLPFGFVGNRATCYDLSYGKAAAGFVAWARAANALYAF
DGLGMLVETAADAFELWHGKRPDTDPVHDALRRQYG
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory