Comparing N515DRAFT_3231 N515DRAFT_3231 xylose-binding protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
4ywhA Crystal structure of an abc transporter solute binding protein (ipr025997) from actinobacillus succinogenes 130z (asuc_0499, target efi-511068) with bound d-xylose
62% identity, 89% coverage: 35:338/341 of query aligns to 6:309/310 of 4ywhA
3ma0A Closed liganded crystal structure of xylose binding protein from escherichia coli (see paper)
62% identity, 89% coverage: 34:337/341 of query aligns to 4:307/313 of 3ma0A
4ys6A Crystal structure of an abc transporter solute binding protein (ipr025997) from clostridium phytofermentans (cphy_1585, target efi- 511156) with bound beta-d-glucose
32% identity, 89% coverage: 35:337/341 of query aligns to 3:323/324 of 4ys6A
4wwhA Crystal structure of an abc transporter solute binding protein (ipr025997) from mycobacterium smegmatis (msmeg_1704, target efi- 510967) with bound d-galactose
35% identity, 89% coverage: 35:337/341 of query aligns to 5:328/329 of 4wwhA
3uugA Crystal structure of the periplasmic sugar binding protein chve (see paper)
32% identity, 90% coverage: 31:337/341 of query aligns to 1:328/329 of 3uugA
3urmA Crystal structure of the periplasmic sugar binding protein chve (see paper)
32% identity, 90% coverage: 31:337/341 of query aligns to 1:328/329 of 3urmA
4rxuA Crystal structure of carbohydrate transporter solute binding protein caur_1924 from chloroflexus aurantiacus, target efi-511158, in complex with d-glucose
36% identity, 84% coverage: 46:333/341 of query aligns to 17:332/340 of 4rxuA
Sites not aligning to the query:
6ruxA P46, an immunodominant surface protein from mycoplasma hyopneumoniae (see paper)
28% identity, 68% coverage: 92:324/341 of query aligns to 70:371/373 of 6ruxA
6s3tA P46, an immunodominant surface protein from mycoplasma hyopneumoniae (see paper)
28% identity, 68% coverage: 92:324/341 of query aligns to 72:373/374 of 6s3tA
Sites not aligning to the query:
2ioyA Crystal structure of thermoanaerobacter tengcongensis ribose binding protein (see paper)
33% identity, 70% coverage: 58:296/341 of query aligns to 26:260/274 of 2ioyA
Sites not aligning to the query:
4ry9B Crystal structure of carbohydrate transporter solute binding protein veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009, a complex with d-talitol
29% identity, 89% coverage: 34:338/341 of query aligns to 4:297/297 of 4ry9B
4ry9A Crystal structure of carbohydrate transporter solute binding protein veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009, a complex with d-talitol
29% identity, 89% coverage: 34:338/341 of query aligns to 4:297/297 of 4ry9A
5dteB Crystal structure of an abc transporter periplasmic solute binding protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081, target efi-511065) with bound d-allose
30% identity, 78% coverage: 31:295/341 of query aligns to 1:270/287 of 5dteB
4zjpA Structure of an abc-transporter solute binding protein (sbp_ipr025997) from actinobacillus succinogenes (asuc_0197, target efi-511067) with bound beta-d-ribopyranose
31% identity, 74% coverage: 40:292/341 of query aligns to 3:255/270 of 4zjpA
1dbpA Identical mutations at corresponding positions in two homologous proteins with non-identical effects (see paper)
30% identity, 74% coverage: 40:292/341 of query aligns to 2:255/271 of 1dbpA
4yo7A Crystal structure of an abc transporter solute binding protein (ipr025997) from bacillus halodurans c-125 (bh2323, target efi- 511484) with bound myo-inositol
28% identity, 87% coverage: 30:324/341 of query aligns to 4:282/287 of 4yo7A
1rpjA Crystal structure of d-allose binding protein from escherichia coli (see paper)
27% identity, 75% coverage: 58:312/341 of query aligns to 27:286/288 of 1rpjA
Sites not aligning to the query:
1gudA Hinge-bending motion of d-allose binding protein from escherichia coli: three open conformations (see paper)
27% identity, 75% coverage: 58:312/341 of query aligns to 27:286/288 of 1gudA
Sites not aligning to the query:
4rxmB Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
28% identity, 73% coverage: 37:286/341 of query aligns to 7:255/288 of 4rxmB
4rxmA Crystal structure of periplasmic abc transporter solute binding protein a7jw62 from mannheimia haemolytica phl213, target efi-511105, in complex with myo-inositol
28% identity, 73% coverage: 37:286/341 of query aligns to 9:257/291 of 4rxmA
Sites not aligning to the query:
>N515DRAFT_3231 N515DRAFT_3231 xylose-binding protein
MKRLFARVLLALVATGLAVAALTACSGKASDQPKIGFSIDDMRLERWTRDRDYFVAAAEK
LGAKVYVQSADGNEQRQVQQLENLISRGVNVLVIVPFNSKVLDNVIAEAKRNGIKVISYD
RLILGADVDAYISFDNEKVGELQAQGVLDAVPKGNYFLLGGSPTDNNAKILREGQLKVLQ
PAIDRGDVKIVGQQWTPEWDASKALRIVEDALTANHNDIQGIVASNDATAGGAIQALAAQ
QLAGKVAVSGQDADLAGVRRVVDGTQAMTVYKPLKTIATTAAELAVKLAKGEAPTYTGKM
NNGKKDVDSVLLQPTLLTKDKVDDTVIKDGFYTREQIYGAK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory