SitesBLAST
Comparing N515DRAFT_3582 N515DRAFT_3582 FAD/FMN-containing dehydrogenase to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3pm9A Crystal structure of a putative dehydrogenase (rpa1076) from rhodopseudomonas palustris cga009 at 2.57 a resolution
39% identity, 94% coverage: 26:466/467 of query aligns to 20:464/465 of 3pm9A
- active site: A149 (= A155), L159 (≠ N165)
- binding flavin-adenine dinucleotide: P69 (= P75), Q70 (≠ S76), G71 (= G77), G72 (= G78), N73 (≠ R79), T74 (= T80), G75 (= G81), L76 (= L82), G79 (= G85), Q80 (≠ A86), L91 (= L97), L133 (≠ F139), G134 (≠ A140), A135 (= A141), C139 (= C145), T140 (≠ S146), G142 (= G148), G143 (= G149), N144 (= N150), S146 (≠ A152), T147 (= T153), A149 (= A155), G150 (= G156), E200 (= E206), G201 (= G207), G204 (= G210), I205 (= I211), I206 (≠ V212), E423 (= E425), H424 (= H426), N460 (= N462)
6lpxA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with 2-oxoglutarate (2-og) (see paper)
37% identity, 94% coverage: 25:465/467 of query aligns to 25:462/466 of 6lpxA
- binding 2-oxoglutaric acid: R333 (= R330), T337 (= T334), K348 (= K344), Y379 (≠ F377), H381 (= H379), H388 (= H386), N390 (= N388), H423 (= H426)
- binding flavin-adenine dinucleotide: W39 (= W39), P75 (= P75), Q76 (≠ S76), G77 (= G77), G78 (= G78), N79 (≠ R79), T80 (= T80), G81 (= G81), M82 (≠ L82), G85 (= G85), S86 (≠ A86), L139 (≠ F139), G140 (≠ A140), A141 (= A141), C145 (= C145), H146 (≠ S146), G148 (= G148), G149 (= G149), N150 (= N150), A152 (= A152), T153 (= T153), A155 (= A155), G156 (= G156), G157 (= G157), E206 (= E206), G207 (= G207), I211 (= I211), I212 (≠ V212), H381 (= H379), E422 (= E425), H423 (= H426), N459 (= N462)
- binding zinc ion: H381 (= H379), H388 (= H386), E422 (= E425)
6lpuA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with l-2-hydroxyglutarate (l-2-hg) (see paper)
37% identity, 94% coverage: 25:465/467 of query aligns to 25:462/466 of 6lpuA
- binding flavin-adenine dinucleotide: W39 (= W39), P75 (= P75), Q76 (≠ S76), G77 (= G77), G78 (= G78), N79 (≠ R79), T80 (= T80), G81 (= G81), M82 (≠ L82), G85 (= G85), S86 (≠ A86), L139 (≠ F139), G140 (≠ A140), A141 (= A141), C145 (= C145), H146 (≠ S146), G148 (= G148), G149 (= G149), N150 (= N150), A152 (= A152), T153 (= T153), A155 (= A155), G156 (= G156), G157 (= G157), E206 (= E206), G207 (= G207), I211 (= I211), I212 (≠ V212), H381 (= H379), E422 (= E425), H423 (= H426), N459 (= N462)
- binding (2s)-2-hydroxypentanedioic acid: M82 (≠ L82), R333 (= R330), T337 (= T334), K348 (= K344), Y379 (≠ F377), H381 (= H379), H388 (= H386), N390 (= N388), H423 (= H426)
- binding zinc ion: H381 (= H379), H388 (= H386), E422 (= E425)
6lpqA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-malate (d-mal) (see paper)
37% identity, 94% coverage: 25:465/467 of query aligns to 25:462/466 of 6lpqA
- binding flavin-adenine dinucleotide: W39 (= W39), P75 (= P75), Q76 (≠ S76), G77 (= G77), G78 (= G78), N79 (≠ R79), T80 (= T80), G81 (= G81), G85 (= G85), S86 (≠ A86), L139 (≠ F139), G140 (≠ A140), A141 (= A141), C145 (= C145), H146 (≠ S146), G148 (= G148), G149 (= G149), N150 (= N150), A152 (= A152), T153 (= T153), A155 (= A155), G156 (= G156), G157 (= G157), E206 (= E206), G207 (= G207), G210 (= G210), I211 (= I211), I212 (≠ V212), H381 (= H379), E422 (= E425), H423 (= H426), N459 (= N462)
- binding d-malate: M82 (≠ L82), R333 (= R330), T337 (= T334), K348 (= K344), Y379 (≠ F377), H381 (= H379), H388 (= H386), E422 (= E425), H423 (= H426)
- binding zinc ion: H381 (= H379), H388 (= H386), E422 (= E425)
6lppA Crystal structure of human d-2-hydroxyglutarate dehydrogenase in complex with d-2-hydroxyglutarate (d-2-hg) (see paper)
37% identity, 94% coverage: 25:465/467 of query aligns to 25:462/466 of 6lppA
- binding (2R)-2-hydroxypentanedioic acid: M82 (≠ L82), R333 (= R330), T337 (= T334), K348 (= K344), Y379 (≠ F377), H381 (= H379), H388 (= H386), N390 (= N388), E422 (= E425), H423 (= H426)
- binding flavin-adenine dinucleotide: W39 (= W39), P75 (= P75), Q76 (≠ S76), G77 (= G77), G78 (= G78), N79 (≠ R79), T80 (= T80), G81 (= G81), M82 (≠ L82), G85 (= G85), S86 (≠ A86), L139 (≠ F139), G140 (≠ A140), A141 (= A141), C145 (= C145), H146 (≠ S146), G148 (= G148), G149 (= G149), N150 (= N150), A152 (= A152), T153 (= T153), A155 (= A155), G156 (= G156), G157 (= G157), E206 (= E206), G207 (= G207), I211 (= I211), I212 (≠ V212), H381 (= H379), E422 (= E425), H423 (= H426), N459 (= N462)
- binding zinc ion: H381 (= H379), H388 (= H386), E422 (= E425)
6lpnB Crystal structure of human d-2-hydroxyglutarate dehydrogenase in apo form (see paper)
37% identity, 94% coverage: 25:465/467 of query aligns to 26:463/467 of 6lpnB
- binding flavin-adenine dinucleotide: W40 (= W39), P76 (= P75), Q77 (≠ S76), G78 (= G77), G79 (= G78), N80 (≠ R79), T81 (= T80), G82 (= G81), M83 (≠ L82), G86 (= G85), S87 (≠ A86), L140 (≠ F139), G141 (≠ A140), A142 (= A141), C146 (= C145), H147 (≠ S146), G149 (= G148), G150 (= G149), N151 (= N150), A153 (= A152), T154 (= T153), A156 (= A155), G157 (= G156), G158 (= G157), E207 (= E206), G208 (= G207), I212 (= I211), I213 (≠ V212), T338 (= T334), H382 (= H379), E423 (= E425), H424 (= H426), N460 (= N462)
Q8N465 D-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.39 from Homo sapiens (Human) (see 7 papers)
37% identity, 94% coverage: 25:465/467 of query aligns to 78:515/521 of Q8N465
- S109 (≠ V56) to W: in D2HGA1; unknown pathological significance; significant loss of catalytic activity; dbSNP:rs142050154
- N127 (≠ V74) to K: in D2HGA1; unknown pathological significance; complete loss of catalytic activity; dbSNP:rs762857195
- G131 (= G78) to V: in D2HGA1; unknown pathological significance; complete loss of catalytic activity
- I147 (≠ V94) to S: in D2HGA1; severe phenotype; unknown pathological significance; almost complete loss of catalytic activity; dbSNP:rs121434361
- M153 (= M100) to T: in D2HGA1; unknown pathological significance; significant loss of catalytic activity; to V: in D2HGA1; unknown pathological significance; significant loss of catalytic activity; dbSNP:rs1432270139
- C172 (≠ I119) to Y: in D2HGA1; unknown pathological significance; moderate reduction in catalytic activity; dbSNP:rs773735172
- P189 (= P136) to L: in D2HGA1; unknown pathological significance; almost complete loss of catalytic activity; dbSNP:rs587783517
- A205 (= A152) to V: in D2HGA1; unknown pathological significance; almost complete loss of catalytic activity; dbSNP:rs750889931
- A231 (≠ G178) to V: in D2HGA1; unknown pathological significance; significant loss of catalytic activity
- G233 (= G180) to S: in D2HGA1; unknown pathological significance; no effect on catalytic activity; dbSNP:rs374535734
- D375 (≠ S319) to Y: in D2HGA1; unknown pathological significance; moderate reduction in catalytic activity; dbSNP:rs267606759
- R386 (= R330) binding ; binding ; binding ; mutation to A: Loss of catalytic activity.
- T390 (= T334) binding ; binding ; mutation to A: Significantly reduced catalytic activity.
- V399 (≠ P342) to M: in D2HGA1; unknown pathological significance; moderate reduction in catalytic activity; dbSNP:rs746519212
- K401 (= K344) binding ; binding ; mutation to A: Loss of catalytic activity.
- R419 (≠ Q362) to H: in D2HGA1; unknown pathological significance; moderate reduction in catalytic activity; dbSNP:rs199908032
- A426 (≠ Y369) to T: in D2HGA1; unknown pathological significance; no effect on catalytic activity; dbSNP:rs146578303
- H434 (= H379) binding ; mutation to A: Loss of catalytic activity.
- G436 (= G381) to V: slight reduction in catalytic activity
- N439 (= N384) to D: in D2HGA1; mild phenotype; unknown pathological significance; moderate reduction in catalytic activity; dbSNP:rs121434362
- H441 (= H386) binding ; mutation to A: Loss of catalytic activity.
- N443 (= N388) binding ; mutation to A: Significantly reduced catalytic activity.
- V444 (= V389) to A: in D2HGA1; severe phenotype; unknown pathological significance; significant reduction in catalytic activity; dbSNP:rs121434360
- A446 (≠ C404) to V: in D2HGA1; unknown pathological significance; moderate reduction in catalytic activity; dbSNP:rs746956176
- E475 (= E425) binding ; mutation to A: Loss of catalytic activity.
- H476 (= H426) binding ; binding ; binding ; mutation to A: Loss of catalytic activity.
- G477 (= G427) to R: in D2HGA1; unknown pathological significance; almost complete loss of catalytic activity; dbSNP:rs1453924640
Sites not aligning to the query:
- 15 R → G: in dbSNP:rs4675887
- 169:521 natural variant: Missing (in D2HGA1; unknown pathological significance)
- 400:521 natural variant: Missing (in D2HGA1; unknown pathological significance; complete loss of catalytic activity)
P39976 D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
33% identity, 94% coverage: 28:465/467 of query aligns to 49:494/496 of P39976