SitesBLAST
Comparing N515DRAFT_3805 FitnessBrowser__Dyella79:N515DRAFT_3805 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
Q63XL8 Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Burkholderia pseudomallei (strain K96243) (see paper)
67% identity, 98% coverage: 9:320/320 of query aligns to 8:317/318 of Q63XL8
3dahC 2.3 a crystal structure of ribose-phosphate pyrophosphokinase from burkholderia pseudomallei (see paper)
66% identity, 96% coverage: 9:314/320 of query aligns to 3:299/300 of 3dahC
6asvC E. Coli prpp synthetase (see paper)
62% identity, 97% coverage: 10:318/320 of query aligns to 4:311/311 of 6asvC
P0A717 Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Escherichia coli (strain K12) (see 4 papers)
62% identity, 97% coverage: 10:318/320 of query aligns to 6:313/315 of P0A717
- D129 (= D133) to A: in mutant PRSA1; alters the binding of divalent cations, especially magnesium. Little alteration in the affinity for ribose 5-phosphate and 27-fold decrease of the affinity for ATP. Absence of inhibition by AMP
- D220 (= D225) mutation to E: 4-fold decrease in the affinity binding for Rib-5-P in the presence of magnesium ions. In the presence of cobalt ions, it shows a 15-fold decrease in the affinity binding for Rib-5-P.; mutation to F: With magnesium or manganese ions, the affinity binding values for ATP and Rib-5-P are comparable to those of the wild-type.
- D221 (= D226) mutation to A: The affinity binding for ATP is comparable to those of the wild-type, apart from a slight decrease in the presence of manganese ions. The affinity binding for Rib-5-P is greatly decreased in the presence of both manganese and cobalt ions but only about 2-fold in the presence of magnesium ions.
- D224 (= D229) mutation to A: With magnesium or manganese ions, the affinity binding values for ATP and Rib-5-P are comparable to those of the wild-type.; mutation to S: With magnesium or manganese ions, the affinity binding values for ATP and Rib-5-P are comparable to those of the wild-type.
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
4s2uA Crystal structure of the phosphorybosylpyrophosphate synthetase from e. Coli
62% identity, 95% coverage: 10:314/320 of query aligns to 5:308/308 of 4s2uA
6nfeB Crystal structure of ribose-phosphate pyrophosphokinase from legionella pneumophila with bound amp, adp, and ribose-5-phosphate
62% identity, 95% coverage: 6:308/320 of query aligns to 1:297/299 of 6nfeB
- binding adenosine-5'-diphosphate: F34 (= F39), D36 (= D41), E38 (= E43), R95 (= R100), Q96 (= Q101), H130 (= H135)
- binding 5-O-phosphono-alpha-D-ribofuranose: H130 (= H135), D214 (= D225), D215 (= D226), I216 (= I227), D218 (= D229), T219 (= T230), A220 (= A231), T222 (= T233)
6nfeA Crystal structure of ribose-phosphate pyrophosphokinase from legionella pneumophila with bound amp, adp, and ribose-5-phosphate
62% identity, 95% coverage: 6:308/320 of query aligns to 1:296/298 of 6nfeA
- binding adenosine-5'-diphosphate: F34 (= F39), D36 (= D41), E38 (= E43), R95 (= R100), Q96 (= Q101), H130 (= H135)
- binding adenosine monophosphate: R98 (= R103), V100 (≠ P105), Y146 (= Y151), R175 (= R181), A178 (= A184), K181 (= K187)
- binding 5-O-phosphono-alpha-D-ribofuranose: H130 (= H135), D213 (= D225), D214 (= D226), I215 (= I227), D217 (= D229), T218 (= T230), A219 (= A231), T221 (= T233)
7xmvA E.Coli phosphoribosylpyrophosphate (prpp) synthetase type a(amp/adp) filament bound with adp, amp and r5p (see paper)
61% identity, 97% coverage: 10:318/320 of query aligns to 4:305/307 of 7xmvA
- binding adenosine-5'-diphosphate: F33 (= F39), D35 (= D41), E37 (= E43), R94 (= R100), R97 (= R103), H129 (= H135)
- binding adenosine monophosphate: R97 (= R103), V99 (≠ P105), R100 (= R106), E131 (≠ D137), F145 (≠ Y151), S147 (= S153), V173 (= V180), A177 (= A184)
- binding 5-O-phosphono-alpha-D-ribofuranose: D212 (= D225), D213 (= D226), M214 (≠ I227), D216 (= D229), T217 (= T230), G219 (= G232), T220 (= T233)
7xmuA E.Coli phosphoribosylpyrophosphate (prpp) synthetase type a filament bound with adp, pi and r5p (see paper)
61% identity, 97% coverage: 10:318/320 of query aligns to 4:305/307 of 7xmuA
- binding adenosine-5'-diphosphate: F33 (= F39), D35 (= D41), E37 (= E43), R94 (= R100), Q95 (= Q101), R97 (= R103), R97 (= R103), R100 (= R106), H129 (= H135), E131 (≠ D137), F145 (≠ Y151), S147 (= S153), V173 (= V180)
- binding 5-O-phosphono-alpha-D-ribofuranose: D168 (= D175), D212 (= D225), M214 (≠ I227), D216 (= D229), T217 (= T230)
P14193 Ribose-phosphate pyrophosphokinase; RPPK; 5-phospho-D-ribosyl alpha-1-diphosphate synthase; Phosphoribosyl diphosphate synthase; Phosphoribosyl pyrophosphate synthase; P-Rib-PP synthase; PPRibP synthase; PRPP synthase; PRPPase; EC 2.7.6.1 from Bacillus subtilis (strain 168) (see 4 papers)
53% identity, 97% coverage: 10:318/320 of query aligns to 12:316/317 of P14193
- RQ 102:103 (= RQ 100:101) binding
- K198 (= K199) mutation to A: Strong decrease of the Vmax value compared to that of the wild-type. The affinity binding for ATP and Rib-5-P are slightly altered compared to the wild-type. The cooperativity of ADP binding is reduced.
- R200 (= R201) mutation to A: Strong decrease of the Vmax value compared to that of the wild-type enzyme. The affinity binding for ATP and Rib-5-P are slightly altered compared to the wild-type.
- R202 (≠ K203) mutation to A: 3-fold decrease in the affinity binding for ATP. Slight decrease of the Vmax value.
- N204 (= N205) mutation to A: 4.5-fold decrease in the affinity binding for ATP. Slight decrease of the Vmax value.
- E207 (≠ T208) mutation to A: 2.5-fold decrease in the affinity binding for ATP. Slight decrease of the Vmax value.
- DTAGT 228:232 (= DTAGT 229:233) binding
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
1ibsA Phosphoribosyldiphosphate synthetase in complex with cadmium ions (see paper)
50% identity, 97% coverage: 10:318/320 of query aligns to 4:297/297 of 1ibsA
1ibsB Phosphoribosyldiphosphate synthetase in complex with cadmium ions (see paper)
50% identity, 97% coverage: 10:318/320 of query aligns to 6:299/299 of 1ibsB
1dkuA Crystal structures of bacillus subtilis phosphoribosylpyrophosphate synthetase: molecular basis of allosteric inhibition and activation. (see paper)
51% identity, 97% coverage: 10:318/320 of query aligns to 4:295/295 of 1dkuA
P60891 Ribose-phosphate pyrophosphokinase 1; PPRibP; Phosphoribosyl pyrophosphate synthase I; PRS-I; EC 2.7.6.1 from Homo sapiens (Human) (see 5 papers)
47% identity, 97% coverage: 10:318/320 of query aligns to 6:313/318 of P60891
- S16 (≠ A20) to P: found in patients with phosphoribosyl pyrophosphate synthetase I deficiency; likely pathogenic; dbSNP:rs869025594
- D52 (≠ E56) to H: in PRPS1 superactivity; no effect on Km; resistant to inhibition by ADP and GDP; dbSNP:rs137852542
- N114 (≠ K119) to S: in PRPS1 superactivity; no effect on Km; resistant to inhibition by ADP and GDP; dbSNP:rs137852540
- L129 (= L134) to I: in PRPS1 superactivity; no effect on Km; resistant to inhibition by ADP and GDP; dbSNP:rs137852543
- S132 (≠ D137) mutation to A: Reduces catalytic activity.; mutation to F: No effect on catalytic activity.
- V142 (= V147) to L: found in a patient with an intermediate phenotype between ARTS and PRPS1 superactivity; likely pathogenic; normal PRPP synthetase activity in fibroblasts; loss of activity in erythrocytes; dbSNP:rs398122855
- N144 (= N149) mutation to H: No effect on catalytic activity.
- Y146 (= Y151) mutation to F: No effect on catalytic activity.; mutation to M: Reduces catalytic activity.
- D183 (≠ K187) to H: in PRPS1 superactivity; no effect on Km; resistant to inhibition by ADP and GDP; dbSNP:rs137852541
- A190 (= A195) to V: in PRPS1 superactivity; no effect on Km; resistant to inhibition by ADP and GDP; dbSNP:rs137852544
- H193 (≠ D198) to Q: in PRPS1 superactivity; no effect on Km; resistant to inhibition by ADP and GDP; dbSNP:rs137852545
- D203 (≠ T208) to H: in a breast cancer sample; somatic mutation
- V219 (= V224) to G: in a breast cancer sample; somatic mutation
- H231 (≠ A236) to D: in a colorectal cancer sample; somatic mutation
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
8dbkB Human prps1 with phosphate, atp, and r5p; hexamer with resolved catalytic loops (see paper)
47% identity, 97% coverage: 10:318/320 of query aligns to 5:312/316 of 8dbkB
- binding adenosine monophosphate: R95 (= R100), Q96 (= Q101), N199 (= N205)
- binding adenosine-5'-triphosphate: F34 (= F39), N36 (≠ D41), E38 (= E43)
- binding phosphate ion: S46 (≠ N51), R48 (= R53)
- binding 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose: H129 (= H135), D170 (= D175), G172 (= G177), K193 (= K199), R195 (= R201), D219 (= D225), D220 (= D226), D223 (= D229), T224 (= T230), C225 (≠ A231), G226 (= G232), T227 (= T233)
8dbeA Human prps1 with adp; hexamer (see paper)
47% identity, 97% coverage: 10:318/320 of query aligns to 5:312/316 of 8dbeA
- binding adenosine-5'-diphosphate: F34 (= F39), N36 (≠ D41), E38 (= E43), R95 (= R100), Q96 (= Q101), K98 (≠ R103), K99 (≠ R104), D100 (≠ P105), S102 (= S107), R103 (= R109), H129 (= H135), D142 (= D148), Y145 (= Y151), S307 (= S313), V308 (= V314), S309 (= S315), F312 (≠ Y318)
- binding 5-O-phosphono-alpha-D-ribofuranose: H129 (= H135), D170 (= D175), D219 (= D225), D220 (= D226), D223 (= D229), T224 (= T230), G226 (= G232), T227 (= T233)
O94413 Ribose-phosphate pyrophosphokinase 2; Phosphoribosyl pyrophosphate synthase 2; EC 2.7.6.1 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
48% identity, 97% coverage: 10:318/320 of query aligns to 8:316/321 of O94413
- S172 (= S173) modified: Phosphoserine
2hcrA Crystal structure of human phosphoribosyl pyrophosphate synthetase 1 in complex with amp(atp), cadmium and sulfate ion (see paper)
46% identity, 97% coverage: 10:318/320 of query aligns to 4:305/305 of 2hcrA
7yk1A Structural basis of human prps2 filaments (see paper)
46% identity, 97% coverage: 9:318/320 of query aligns to 4:303/306 of 7yk1A
- binding adenosine-5'-diphosphate: F34 (= F39), N36 (≠ D41), E38 (= E43), S46 (≠ N51), R48 (= R53), R95 (= R100), K99 (≠ R104), D100 (≠ P105), K101 (≠ R106), S102 (= S107), R103 (= R109), H129 (= H135), D142 (= D148), S298 (= S313), S300 (= S315), F303 (≠ Y318)
- binding phosphate ion: D214 (= D229), C216 (≠ A231), T218 (= T233)
8dbgA Human prps1 with phosphate and atp; hexamer (see paper)
46% identity, 97% coverage: 10:318/320 of query aligns to 5:305/309 of 8dbgA
- binding adenosine-5'-triphosphate: F34 (= F39), N36 (≠ D41), E38 (= E43), R95 (= R100), Q96 (= Q101), K98 (≠ R103), H129 (= H135)
- binding phosphate ion: S46 (≠ N51), R48 (= R53), D216 (= D229), T217 (= T230), C218 (≠ A231), T220 (= T233)
Query Sequence
>N515DRAFT_3805 FitnessBrowser__Dyella79:N515DRAFT_3805
MTVDTSTPMLFTGNAHRALAEDVATRLGVPLGKALVGRFSDGETQIEIEENVRRQEVFVI
QPTGAPSAENLFELLTLVDALKRASAASVTAVMPYFGYARQDRRPRSARVPITAKMVAKM
IGTVGVDRVLTVDLHADQIQGFFDIPVDNVYASPLLLADIWRNHSMDNLIVVSPDVGGVV
RARALAKRLDDADLAIIDKRRPKANVATVMNIIGDVDGKTCVLVDDIVDTAGTLCAAAAA
LKERGARKVVAYCVHPVLSGAAISNIENSQLDQLVVTNTLPLRPEAQACAKIRQLSVAEL
LAETIRRIAFGESVSSLYVD
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory