Comparing NP_661846.1 NCBI__GCF_000006985.1:NP_661846.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
45% identity, 89% coverage: 11:224/241 of query aligns to 1:223/232 of 1f3oA
1l2tA Dimeric structure of mj0796, a bacterial abc transporter cassette (see paper)
44% identity, 89% coverage: 11:224/241 of query aligns to 1:223/230 of 1l2tA
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
41% identity, 92% coverage: 7:227/241 of query aligns to 1:226/233 of P75957
7mdyC Lolcde nucleotide-bound
41% identity, 90% coverage: 11:227/241 of query aligns to 2:223/226 of 7mdyC
7arlD Lolcde in complex with lipoprotein and adp (see paper)
42% identity, 89% coverage: 11:225/241 of query aligns to 2:221/222 of 7arlD
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
40% identity, 91% coverage: 9:227/241 of query aligns to 2:225/229 of 7v8iD
P75831 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
41% identity, 90% coverage: 11:227/241 of query aligns to 4:224/648 of P75831
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
40% identity, 91% coverage: 9:227/241 of query aligns to 1:223/226 of 5xu1B
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
42% identity, 90% coverage: 11:226/241 of query aligns to 1:221/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
41% identity, 90% coverage: 11:226/241 of query aligns to 2:222/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
41% identity, 90% coverage: 11:226/241 of query aligns to 2:222/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
41% identity, 90% coverage: 11:226/241 of query aligns to 2:222/344 of 6cvlD
5lilA Structure of aggregatibacter actinomycetemcomitans macb bound to atpys (p21) (see paper)
38% identity, 92% coverage: 11:232/241 of query aligns to 3:228/615 of 5lilA
5lj7A Structure of aggregatibacter actinomycetemcomitans macb bound to atp (p21) (see paper)
38% identity, 92% coverage: 11:232/241 of query aligns to 3:228/592 of 5lj7A
2pclA Crystal structure of abc transporter with complex (aq_297) from aquifex aeolicus vf5
45% identity, 81% coverage: 31:225/241 of query aligns to 19:217/223 of 2pclA
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
40% identity, 92% coverage: 9:230/241 of query aligns to 2:227/650 of 5ws4A
7w78A Heme exporter hrtba in complex with mg-amppnp (see paper)
42% identity, 90% coverage: 11:226/241 of query aligns to 4:217/218 of 7w78A
P9WQK5 Uncharacterized ABC transporter ATP-binding protein Rv0073 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
41% identity, 86% coverage: 12:219/241 of query aligns to 4:215/330 of P9WQK5
8i6rB Cryo-em structure of pseudomonas aeruginosa ftse(e163q)x/envc complex with atp in peptidisc (see paper)
37% identity, 92% coverage: 11:231/241 of query aligns to 1:222/222 of 8i6rB
7w79A Heme exporter hrtba in complex with mn-amppnp (see paper)
43% identity, 89% coverage: 11:225/241 of query aligns to 4:216/216 of 7w79A
>NP_661846.1 NCBI__GCF_000006985.1:NP_661846.1
MSMMDQVGQTVLSVDGVSKSYLMGEVTVKALHDISLDFGAGQLVVLLGASGSGKSTLLNI
VGGLDVPDSGTVSFKGQDINAKGEAGLTAFRRRSIGFVFQFYNLIASLSALENVQLVTEL
VENPMPPEEALRLVGLGDRINHFPSQLSGGEQQRVAIARAVAKRPELLLCDEPTGALDYR
TGKLVLEVIEKVNRELGTTTLVITHNVSISGMADRIITLRSGEVVEDRRNEKKISPSELS
W
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory