SitesBLAST
Comparing PP_0184 FitnessBrowser__Putida:PP_0184 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
2e9fB Crystal structure of t.Th.Hb8 argininosuccinate lyase complexed with l-arginine
52% identity, 93% coverage: 23:455/468 of query aligns to 3:437/450 of 2e9fB
- active site: E71 (= E91), T146 (= T164), H147 (= H165), S268 (= S286), S269 (= S287), K274 (= K292), E281 (= E299)
- binding arginine: R98 (= R118), N99 (= N119), V102 (= V122), Y308 (= Y326), Q313 (= Q331), K316 (= K334)
1tj7B Structure determination and refinement at 2.44 a resolution of argininosuccinate lyase from e. Coli (see paper)
48% identity, 96% coverage: 17:465/468 of query aligns to 1:450/451 of 1tj7B
P04424 Argininosuccinate lyase; ASAL; Arginosuccinase; EC 4.3.2.1 from Homo sapiens (Human) (see 12 papers)
44% identity, 99% coverage: 5:468/468 of query aligns to 1:462/464 of P04424
- R12 (= R17) to Q: in ARGINSA; 18-fold reduction in catalytic efficiency toward argininosuccinate; dbSNP:rs145138923
- D31 (= D36) to N: in ARGINSA; reduction of argininosuccinate lyase activity; no effect on protein expression; dbSNP:rs754995756
- K51 (≠ Q56) mutation to N: 2-fold reduction in activity.
- K69 (≠ T74) modified: N6-acetyllysine
- E73 (= E78) to K: in ARGINSA; complete loss of argininosuccinate lyase activity; abolishes protein expression
- D87 (= D92) to G: in ARGINSA; loss of argininosuccinate lyase activity; dbSNP:rs752100894
- H89 (= H94) mutation to Q: 10-fold reduction in activity.
- R94 (≠ A99) to C: in ARGINSA; severe; dbSNP:rs374304304
- R95 (= R100) to C: in ARGINSA; loss of argininosuccinate lyase activity; dbSNP:rs28940585
- R113 (= R118) to Q: in ARGINSA; complete loss of argininosuccinate lyase activity; no effect on protein expression; no effect on nitric oxide production; dbSNP:rs752783461
- D120 (= D125) to E: in ARGINSA; severe
- V178 (≠ E183) to M: in ARGINSA; reduction of argininosuccinate lyase activity; no effect on protein expression; dbSNP:rs28941473
- T181 (≠ S186) to S: in a breast cancer sample; somatic mutation
- R182 (= R187) to Q: in ARGINSA; reduction of argininosuccinate lyase activity; reduces protein expression; dbSNP:rs751590073
- R186 (= R191) to Q: in ARGINSA; reduction of argininosuccinate lyase activity; reduces protein expression; dbSNP:rs752397242
- G200 (= G205) to V: in a breast cancer sample; somatic mutation
- R236 (= R241) to W: in ARGINSA; complete loss of argininosuccinate lyase activity; no effect on protein expression; no effect on NOS complex formation; dbSNP:rs761268464
- D237 (= D242) to N: in ARGINSA; severe; dbSNP:rs552951774
- Q286 (= Q291) to R: in ARGINSA; complete loss of argininosuccinate lyase activity; no effect on protein expression; dbSNP:rs28941472
- K288 (= K293) modified: N6-acetyllysine; mutation to R: Refractory to inhibition by TSA and NAM and by addition of extra amino acids. No effect on protein structure.
- R297 (= R302) to Q: in ARGINSA; reduction of argininosuccinate lyase activity; no effect on protein expression; dbSNP:rs750431938
- R306 (≠ A311) to W: in ARGINSA; severe; dbSNP:rs868834862
- Q326 (= Q331) to L: in ARGINSA; severe
- V335 (≠ A340) to L: in ARGINSA; reduction of argininosuccinate lyase activity; no effect on protein expression
- M360 (= M365) to T: in ARGINSA; loss of argininosuccinate lyase activity; may cause protein misfolding; dbSNP:rs875989948
- M382 (≠ L388) to R: in ARGINSA; reduction of argininosuccinate lyase activity; reduces protein expression
- R385 (= R391) to L: in ARGINSA; severe
- H388 (= H394) to Q: in ARGINSA; severe
- A398 (≠ G404) to D: in ARGINSA; impairs tetramer formation likely due to protein misfolding; loss of argininosuccinate lyase activity
- R456 (≠ K462) to W: in ARGINSA; reduction of argininosuccinate lyase activity; reduces protein expression; dbSNP:rs759396688
P24058 Argininosuccinate lyase; ASAL; Arginosuccinase; Delta crystallin II; Delta-2 crystallin; EC 4.3.2.1 from Anas platyrhynchos (Mallard) (Anas boschas) (see 4 papers)
42% identity, 97% coverage: 14:465/468 of query aligns to 11:461/468 of P24058
- W11 (= W14) mutation to A: 98% decrease in catalytic efficiency.; mutation to F: 90% decrease in catalytic efficiency.; mutation to M: 99% decrease in catalytic efficiency.; mutation to R: 97% decrease in catalytic efficiency.; mutation to Y: 50% decrease in catalytic efficiency.
- S29 (= S32) binding in chain A; mutation to A: 10% decrease in catalytic efficiency.
- D33 (= D36) mutation to N: 99% decrease in catalytic efficiency.
- D89 (= D92) mutation to N: Loss of activity.
- N116 (= N119) binding in chain A; mutation to D: 99% decrease in catalytic efficiency.
- D117 (= D120) mutation to A: 55% decrease in catalytic efficiency.; mutation to E: 58% decrease in catalytic efficiency.
- T161 (= T164) binding in chain C; mutation to A: Loss of activity.; mutation to D: Loss of activity.; mutation to S: 30% decrease in catalytic efficiency.; mutation to V: Loss of activity.
- H162 (= H165) mutation to E: Loss of activity.
- R238 (= R241) mutation to Q: Loss of activity.
- T281 (= T284) mutation to V: 80% decrease in catalytic efficiency.
- S283 (= S286) mutation to A: Loss of activity.; mutation to C: Loss of activity.; mutation to D: Loss of activity.; mutation to H: Loss of activity.; mutation to T: Loss of activity.
- N291 (= N294) binding in chain B; mutation to L: Loss of activity.
- D293 (= D296) mutation to N: 99% decrease in catalytic efficiency.
- E296 (= E299) mutation to D: Loss of activity.
- Y323 (= Y326) binding in chain A
- K325 (= K328) mutation to N: 99% decrease in catalytic efficiency.
- Q328 (= Q331) binding in chain A
- D330 (= D333) mutation to N: Loss of activity.
- K331 (= K334) binding in chain A; mutation to Q: Loss of activity.
1k7wD Crystal structure of s283a duck delta 2 crystallin mutant (see paper)
42% identity, 95% coverage: 23:465/468 of query aligns to 3:444/450 of 1k7wD
- active site: E71 (= E91), T144 (= T164), H145 (= H165), A266 (≠ S286), S267 (= S287), K272 (= K292), E279 (= E299)
- binding argininosuccinate: R98 (= R118), N99 (= N119), V102 (= V122), T144 (= T164), H145 (= H165), Y306 (= Y326), Q311 (= Q331), K314 (= K334)
1hy0A Crystal structure of wild type duck delta 1 crystallin (eye lens protein) (see paper)
41% identity, 95% coverage: 23:465/468 of query aligns to 1:442/447 of 1hy0A
P02521 Delta-1 crystallin; Delta crystallin I from Gallus gallus (Chicken) (see paper)
39% identity, 99% coverage: 5:465/468 of query aligns to 1:459/466 of P02521
- A2 (≠ S6) modified: Blocked amino end (Ala)
6ienB Substrate/product bound argininosuccinate lyase from mycobacterium tuberculosis (see paper)
45% identity, 93% coverage: 21:454/468 of query aligns to 1:434/454 of 6ienB
- binding argininosuccinate: S97 (= S117), R98 (= R118), N99 (= N119), T144 (= T164), H145 (= H165), S266 (= S286), S267 (= S287), M269 (= M289), K272 (= K292), Y306 (= Y326), Q311 (= Q331), K314 (= K334)
6ienA Substrate/product bound argininosuccinate lyase from mycobacterium tuberculosis (see paper)
45% identity, 93% coverage: 21:454/468 of query aligns to 1:432/452 of 6ienA
- binding argininosuccinate: R98 (= R118), N99 (= N119), V102 (= V122), T144 (= T164), H145 (= H165), Y304 (= Y326), Q309 (= Q331), K312 (= K334)
- binding fumaric acid: S266 (= S286), S267 (= S287), K270 (= K292), N272 (= N294)
6ienC Substrate/product bound argininosuccinate lyase from mycobacterium tuberculosis (see paper)
42% identity, 93% coverage: 21:454/468 of query aligns to 1:398/418 of 6ienC
- binding arginine: R98 (= R118), N99 (= N119), V102 (= V122), Y306 (= Y326), Q311 (= Q331), K314 (= K334)
- binding argininosuccinate: T144 (= T164), H145 (= H165), S266 (= S286), S267 (= S287), M269 (= M289), K272 (= K292)
- binding fumaric acid: S97 (= S117), R98 (= R118), N99 (= N119)
6g3iA Crystal structure of edds lyase in complex with n-(2-aminoethyl) aspartic acid (aeaa) (see paper)
34% identity, 85% coverage: 23:421/468 of query aligns to 25:409/496 of 6g3iA
Sites not aligning to the query:
6g3hA Crystal structure of edds lyase in complex with ss-edds (see paper)
34% identity, 85% coverage: 23:421/468 of query aligns to 25:409/497 of 6g3hA
Sites not aligning to the query:
6g3gA Crystal structure of edds lyase in complex with succinate (see paper)
34% identity, 85% coverage: 23:421/468 of query aligns to 25:409/497 of 6g3gA
6g3fA Crystal structure of edds lyase in complex with fumarate (see paper)
34% identity, 85% coverage: 23:421/468 of query aligns to 25:409/497 of 6g3fA
3r6vG Crystal structure of aspartase from bacillus sp. Ym55-1 with bound l- aspartate (see paper)
25% identity, 65% coverage: 112:414/468 of query aligns to 132:450/463 of 3r6vG
3r6qA A triclinic-lattice structure of aspartase from bacillus sp. Ym55-1 (see paper)
25% identity, 65% coverage: 112:414/468 of query aligns to 131:449/462 of 3r6qA
P12047 Adenylosuccinate lyase; ASL; Adenylosuccinase; ASase; Glutamyl--tRNA ligase regulatory factor; EC 4.3.2.2 from Bacillus subtilis (strain 168) (see paper)
25% identity, 54% coverage: 101:355/468 of query aligns to 77:331/431 of P12047
- H89 (= H113) mutation to Q: Abolishes enzyme activity.
- H141 (= H165) mutation to Q: Abolishes enzyme activity.
- Q212 (≠ N233) mutation to E: Decreases catalytic activity 1000-fold.; mutation to M: Abolishes enzyme activity.
- N270 (= N294) mutation N->D,L: Abolishes enzyme activity.
- R301 (≠ K328) mutation R->K,Q: Abolishes enzyme activity.
2x75A Staphylococcus aureus adenylosuccinate lyase (see paper)
25% identity, 49% coverage: 100:329/468 of query aligns to 75:301/427 of 2x75A
Sites not aligning to the query:
6wngA Crystal structure of an aspartate ammonia-lyase from elizabethkingia anophelis nuhp1
26% identity, 65% coverage: 112:417/468 of query aligns to 135:441/466 of 6wngA
Sites not aligning to the query:
P9WN93 Fumarate hydratase class II; Fumarase C; Aerobic fumarase; Iron-independent fumarase; EC 4.2.1.2 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
28% identity, 32% coverage: 159:310/468 of query aligns to 181:342/474 of P9WN93
- T186 (= T164) binding
- S318 (= S286) active site; mutation S->A,C: Absence of fumarase activity.
- S319 (= S287) binding
- KVN 324:326 (≠ KKN 292:294) binding
Sites not aligning to the query:
- 104:106 binding
- 138:140 binding
Query Sequence
>PP_0184 FitnessBrowser__Putida:PP_0184
MSESMSTEKTNQSWGGRFSEPVDAFVARFTASVDFDKRLYRHDIMGSIAHATMLAQVGVL
SDAERDTIIDGLKTIQGEIEAGNFDWRVDLEDVHMNIEARLTDRIGITGKKLHTGRSRND
QVATDIRLWLRDEIDLILGEITRLQQGLLEQAEREAETIMPGFTHLQTAQPVTFGHHLLA
WFEMLSRDYERLVDCRKRTNRMPLGSAALAGTTYPIDRELTCKLLGFEAVAGNSLDGVSD
RDFAIEFCAAASVAMMHLSRFSEELVLWTSAQFQFIDLPDRFCTGSSIMPQKKNPDVPEL
VRGKSGRVFGALTGLLTLMKGQPLAYNKDNQEDKEPLFDAADTLRDSLRAFADMIPAIKP
KHAIMREAALRGFSTATDLADYLVRRGLPFRDCHEIVGHAVKYGVDTGKDLAEMSLDELR
QFSDQIEQDVFAVLTLEGSVNARDHIGGTAPAQVRAAVVRGKALLASR
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory