SitesBLAST – Find functional sites

 

SitesBLAST

Comparing PP_0231 FitnessBrowser__Putida:PP_0231 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

A0A0H2ZQB9 Ergothioneine transporter EgtUBC from Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) (see paper)
34% identity, 52% coverage: 126:269/279 of query aligns to 61:203/506 of A0A0H2ZQB9

query
sites
A0A0H2ZQB9
Y
 
F
R
 
Q
P
 
T
I
 
I
P
 
P
P
 
S
L
 
L
A
 
A
Y
 
L
L
 
L
P
 
G
L
 
L
I
 
F
V
 
I
I
 
P
W
 
L
C
 
M
G
 
G
I
 
I
G
 
G
E
 
T
L
 
L
S
 
P
K
 
A
V
 
L
-
 
T
-
 
A
L
 
L
L
 
V
I
 
I
Y
 
Y
L
 
-
A
 
A
I
 
I
F
 
F
A
 
-
P
 
P
I
 
I
A
 
L
I
 
Q
A
 
N
T
 
T
A
 
I
T
 
T
G
 
G
V
 
L
R
 
K
T
 
G
V
 
I
D
 
D
P
 
P
A
 
S
K
 
L
L
 
Q
R
 
E
A
 
A
A
 
G
Q
 
I
S
 
A
L
 
F
G
 
G
A
 
M
T
 
T
K
 
R
A
 
W
Q
 
E
L
 
R
I
 
L
R
 
K
H
 
K
V
 
F
I
 
E
L
 
I
P
 
P
S
 
L
A
 
A
L
 
M
P
 
P
D
 
V
I
 
I
L
 
M
T
 
S
G
 
G
I
 
I
R
 
R
I
 
T
G
 
A
-
 
A
-
 
V
L
 
L
G
 
I
V
 
I
G
 
G
W
 
T
S
 
A
T
 
T
L
 
L
V
 
-
A
 
-
A
 
A
E
 
T
L
 
L
I
 
I
A
 
G
A
 
A
T
 
-
S
 
G
G
 
G
L
 
L
G
 
G
F
 
S
M
 
F
V
 
I
Q
 
L
S
 
L
A
 
G
A
 
I
Q
 
D
F
 
R
L
 
N
V
 
N
T
 
A
D
 
S
V
 
L
V
 
I
V
 
L
L
 
I
G
 
G
I
 
A
L
 
L
L
 
S
I
 
S
A
 
A
L
 
V
I
 
L
A
 
A
F
 
I
A
 
A
L
 
F
E
 
N
M
 
F
S
 
L
L
 
L
R
 
K
A
 
V
L
 
M
Q
 
E
R
 
K

Sites not aligning to the query:

B5Z7I3 Ergothioneine transport permease/ergothioneine binding protein EgtU from Helicobacter pylori (strain G27) (see paper)
32% identity, 38% coverage: 105:211/279 of query aligns to 78:184/553 of B5Z7I3

query
sites
B5Z7I3
V
 
I
G
 
G
I
 
V
A
 
F
I
 
A
G
 
F
Y
 
Y
N
 
N
R
 
S
V
 
K
A
 
A
R
 
R
G
 
A
I
 
F
L
 
L
D
 
L
P
 
P
L
 
V
I
 
V
E
 
N
F
 
F
Y
 
L
R
 
Y
P
 
T
I
 
I
P
 
P
P
 
S
L
 
L
A
 
A
Y
 
L
L
 
F
P
 
A
L
 
L
I
 
F
V
 
I
I
 
P
W
 
V
C
 
I
G
 
G
I
 
V
G
 
G
E
 
L
L
 
K
S
 
N
K
 
A
V
 
L
L
 
L
L
 
V
I
 
L
Y
 
V
L
 
L
A
 
Y
I
 
G
F
 
L
A
 
L
P
 
P
I
 
I
A
 
V
I
 
Y
A
 
S
T
 
T
A
 
Y
T
 
N
G
 
A
V
 
L
R
 
K
T
 
E
V
 
V
D
 
R
P
 
E
A
 
E
K
 
V
L
 
I
R
 
K
A
 
A
A
 
A
Q
 
I
S
 
G
L
 
L
G
 
G
A
 
C
T
 
N
K
 
P
A
 
K
Q
 
E
L
 
L
I
 
F
R
 
F
H
 
R
V
 
V
I
 
H
L
 
F
P
 
L
S
 
L
A
 
A
L
 
I
P
 
P
D
 
Q
I
 
I
L
 
L
T
 
A
G
 
G
I
 
L
R
 
R
I
 
I
G
 
A
L
 
V

Sites not aligning to the query:

Query Sequence

>PP_0231 FitnessBrowser__Putida:PP_0231
MSSLDLPVAGKHNTQIRPAATLRRPLSTRWISTLTLASLLMVWWLVTAAGWVEPLFLPSP
GDILAKAWTLLTQGYMDASLWQHLSASLGRIGLALVAATLTAIPVGIAIGYNRVARGILD
PLIEFYRPIPPLAYLPLIVIWCGIGELSKVLLIYLAIFAPIAIATATGVRTVDPAKLRAA
QSLGATKAQLIRHVILPSALPDILTGIRIGLGVGWSTLVAAELIAATSGLGFMVQSAAQF
LVTDVVVLGILLIALIAFALEMSLRALQRKLVPWHGQIH

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory