SitesBLAST
Comparing PP_0762 PP_0762 Glycerate dehydrogenase to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5aovA Ternary crystal structure of pyrococcus furiosus glyoxylate hydroxypyruvate reductase in presence of glyoxylate (see paper)
33% identity, 86% coverage: 41:315/321 of query aligns to 37:315/334 of 5aovA
- active site: L100 (≠ G103), R241 (= R238), D265 (= D262), E270 (= E267), H288 (= H288)
- binding glyoxylic acid: M52 (≠ N56), L53 (vs. gap), L53 (vs. gap), Y74 (≠ A77), A75 (= A78), A75 (= A78), V76 (≠ T79), G77 (= G80), R241 (= R238), H288 (= H288)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: V76 (≠ T79), G77 (= G80), L100 (≠ G103), T104 (≠ V107), G157 (= G159), F158 (≠ H160), G159 (= G161), R160 (≠ E162), I161 (≠ L163), Y179 (vs. gap), S180 (= S180), R181 (≠ G181), T182 (≠ Q182), K184 (≠ P184), A211 (≠ H208), V212 (≠ C209), P213 (= P210), T218 (= T215), I239 (≠ T236), A240 (= A237), R241 (= R238), D265 (= D262), H288 (= H288), G290 (≠ A290)
P87228 Putative D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
31% identity, 89% coverage: 22:306/321 of query aligns to 69:362/466 of P87228
- S87 (≠ P40) modified: Phosphoserine
- S258 (≠ N212) modified: Phosphoserine
1wwkA Crystal structure of phosphoglycerate dehydrogenase from pyrococcus horikoshii ot3
32% identity, 82% coverage: 53:314/321 of query aligns to 46:304/304 of 1wwkA
- active site: S96 (≠ G103), R230 (= R238), D254 (= D262), E259 (= E267), H278 (= H288)
- binding nicotinamide-adenine-dinucleotide: V100 (= V107), G146 (= G159), F147 (≠ H160), G148 (= G161), R149 (≠ E162), I150 (≠ L163), Y168 (≠ G181), D169 (≠ Q182), P170 (≠ I183), Y171 (≠ P184), H200 (= H208), V201 (≠ C209), P202 (= P210), T207 (= T215), T228 (= T236), S229 (≠ A237), R230 (= R238), D254 (= D262), H278 (= H288), G280 (≠ A290), A281 (≠ W291)
3ddnB Crystal structure of hydroxypyruvic acid phosphate bound d-3- phosphoglycerate dehydrogenase in mycobacterium tuberculosis (see paper)
34% identity, 89% coverage: 30:315/321 of query aligns to 21:305/525 of 3ddnB
- active site: N97 (≠ G103), R231 (= R238), D255 (= D262), E260 (= E267), H278 (= H288)
- binding 2-oxo-3-(phosphonooxy)propanoic acid: R49 (≠ S55), S50 (≠ N56), R70 (≠ V76), G72 (≠ A78), V73 (≠ T79), G74 (= G80), N97 (≠ G103), A281 (≠ W291), Q287 (≠ R297)
3dc2A Crystal structure of serine bound d-3-phosphoglycerate dehydrogenase from mycobacterium tuberculosis (see paper)
34% identity, 89% coverage: 30:315/321 of query aligns to 20:304/526 of 3dc2A
Sites not aligning to the query:
6p2iA Acyclic imino acid reductase (bsp5) in complex with NADPH and d-arg (see paper)
30% identity, 92% coverage: 27:320/321 of query aligns to 21:306/307 of 6p2iA
- binding d-arginine: E51 (≠ N56), I72 (≠ A77), T73 (≠ A78), T74 (= T79), S75 (≠ G80), Y97 (= Y102), R229 (= R238), W277 (= W291), N286 (≠ I300)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: T74 (= T79), S75 (≠ G80), S98 (≠ G103), V102 (= V107), G149 (= G159), I150 (≠ H160), G151 (= G161), Q152 (≠ E162), I153 (≠ L163), L171 (≠ G181), N172 (≠ Q182), K173 (≠ I183), S174 (≠ P184), R176 (= R186), H199 (= H208), I200 (≠ C209), P201 (= P210), T206 (= T215), T227 (= T236), C228 (≠ A237), D253 (= D262), A276 (= A290), W277 (= W291)
Sites not aligning to the query:
1hl3A Ctbp/bars in ternary complex with NAD(h) and pidlskk peptide (see paper)
36% identity, 77% coverage: 52:298/321 of query aligns to 48:304/331 of 1hl3A
- active site: S99 (≠ G103), R241 (= R238), D265 (= D262), E270 (= E267), H290 (= H288)
- binding nicotinamide-adenine-dinucleotide: S75 (≠ T79), T103 (≠ V107), G156 (= G159), L157 (≠ H160), G158 (= G161), R159 (≠ E162), V160 (≠ L163), Y178 (vs. gap), D179 (≠ S180), P180 (≠ G181), Y181 (≠ Q182), H211 (= H208), C212 (= C209), G213 (≠ P210), N215 (= N212), N218 (≠ T215), T239 (= T236), A240 (= A237), R241 (= R238), D265 (= D262), H290 (= H288), W293 (= W291)
Sites not aligning to the query:
- binding : 17, 26, 27, 28, 29, 36, 37, 38, 39, 41, 331
1hkuA Ctbp/bars: a dual-function protein involved in transcription corepression and golgi membrane fission (see paper)
36% identity, 77% coverage: 52:298/321 of query aligns to 48:304/331 of 1hkuA
- active site: S99 (≠ G103), R241 (= R238), D265 (= D262), E270 (= E267), H290 (= H288)
- binding nicotinamide-adenine-dinucleotide: S75 (≠ T79), T103 (≠ V107), I155 (≠ L158), G156 (= G159), G158 (= G161), R159 (≠ E162), V160 (≠ L163), Y178 (vs. gap), D179 (≠ S180), P180 (≠ G181), Y181 (≠ Q182), H211 (= H208), C212 (= C209), G213 (≠ P210), N215 (= N212), N218 (≠ T215), T239 (= T236), A240 (= A237), R241 (= R238), D265 (= D262), H290 (= H288), A292 (= A290), W293 (= W291)
Sites not aligning to the query:
4lceA Ctbp1 in complex with substrate mtob (see paper)
36% identity, 77% coverage: 52:298/321 of query aligns to 47:303/327 of 4lceA
- active site: S98 (≠ G103), R240 (= R238), D264 (= D262), E269 (= E267), H289 (= H288)
- binding 4-(methylsulfanyl)-2-oxobutanoic acid: Y50 (≠ S55), H51 (≠ N56), R71 (≠ V76), I72 (≠ A77), G73 (≠ A78), S74 (≠ T79), G75 (= G80), R240 (= R238), H289 (= H288), W292 (= W291)
- binding nicotinamide-adenine-dinucleotide: S74 (≠ T79), G75 (= G80), S98 (≠ G103), T102 (≠ V107), I154 (≠ L158), G155 (= G159), G157 (= G161), R158 (≠ E162), V159 (≠ L163), Y177 (vs. gap), D178 (≠ S180), P179 (≠ G181), Y180 (≠ Q182), L181 (≠ I183), H210 (= H208), C211 (= C209), G212 (≠ P210), N214 (= N212), N217 (≠ T215), T238 (= T236), A239 (= A237), R240 (= R238), D264 (= D262), H289 (= H288), A291 (= A290), W292 (= W291)
4u6sA Ctbp1 in complex with substrate phenylpyruvate (see paper)
36% identity, 77% coverage: 52:298/321 of query aligns to 48:304/328 of 4u6sA
- active site: S99 (≠ G103), R241 (= R238), D265 (= D262), E270 (= E267), H290 (= H288)
- binding nicotinamide-adenine-dinucleotide: S75 (≠ T79), G76 (= G80), T103 (≠ V107), I155 (≠ L158), G156 (= G159), L157 (≠ H160), G158 (= G161), R159 (≠ E162), V160 (≠ L163), Y178 (vs. gap), D179 (≠ S180), P180 (≠ G181), Y181 (≠ Q182), L182 (≠ I183), H211 (= H208), C212 (= C209), G213 (≠ P210), N215 (= N212), N218 (≠ T215), L221 (≠ M218), T239 (= T236), A240 (= A237), R241 (= R238), D265 (= D262), H290 (= H288), A292 (= A290), W293 (= W291)
- binding 3-phenylpyruvic acid: Y51 (≠ S55), H52 (≠ N56), R72 (≠ V76), I73 (≠ A77), G74 (≠ A78), S75 (≠ T79), G76 (= G80), A98 (≠ Y102), R241 (= R238), H290 (= H288), W293 (= W291), M302 (≠ S296)
4u6qA Ctbp1 bound to inhibitor 2-(hydroxyimino)-3-phenylpropanoic acid (see paper)
36% identity, 77% coverage: 52:298/321 of query aligns to 48:304/328 of 4u6qA
- active site: S99 (≠ G103), R241 (= R238), D265 (= D262), E270 (= E267), H290 (= H288)
- binding (2E)-2-(hydroxyimino)-3-phenylpropanoic acid: Y51 (≠ S55), H52 (≠ N56), R72 (≠ V76), I73 (≠ A77), G74 (≠ A78), S75 (≠ T79), G76 (= G80), R241 (= R238), H290 (= H288), W293 (= W291), M302 (≠ S296)
- binding 1,4-dihydronicotinamide adenine dinucleotide: S75 (≠ T79), G76 (= G80), T103 (≠ V107), I155 (≠ L158), G156 (= G159), L157 (≠ H160), G158 (= G161), R159 (≠ E162), V160 (≠ L163), Y178 (vs. gap), D179 (≠ S180), P180 (≠ G181), Y181 (≠ Q182), L182 (≠ I183), H211 (= H208), C212 (= C209), G213 (≠ P210), N215 (= N212), N218 (≠ T215), T239 (= T236), A240 (= A237), R241 (= R238), D265 (= D262), H290 (= H288), A292 (= A290), W293 (= W291)
6cdfA Human ctbp1 (28-378) (see paper)
36% identity, 77% coverage: 52:298/321 of query aligns to 49:305/333 of 6cdfA
- binding 1,4-dihydronicotinamide adenine dinucleotide: S76 (≠ T79), G77 (= G80), T104 (≠ V107), I156 (≠ L158), G157 (= G159), G159 (= G161), R160 (≠ E162), V161 (≠ L163), Y179 (vs. gap), D180 (≠ S180), P181 (≠ G181), Y182 (≠ Q182), L183 (≠ I183), H212 (= H208), C213 (= C209), G214 (≠ P210), N216 (= N212), N219 (≠ T215), T240 (= T236), A241 (= A237), R242 (= R238), D266 (= D262), H291 (= H288), A293 (= A290), W294 (= W291)
6v89A Human ctbp1 (28-375) in complex with amp (see paper)
36% identity, 77% coverage: 52:298/321 of query aligns to 48:304/332 of 6v89A
- binding adenosine monophosphate: I155 (≠ L158), G156 (= G159), L157 (≠ H160), G158 (= G161), R159 (≠ E162), Y178 (vs. gap), D179 (≠ S180), P180 (≠ G181), Y181 (≠ Q182), H211 (= H208), C212 (= C209), N215 (= N212), N218 (≠ T215)
4lcjA Ctbp2 in complex with substrate mtob (see paper)
34% identity, 80% coverage: 52:307/321 of query aligns to 47:320/330 of 4lcjA
- active site: A98 (≠ G103), R240 (= R238), D264 (= D262), E269 (= E267), H289 (= H288)
- binding 4-(methylsulfanyl)-2-oxobutanoic acid: Y50 (≠ S55), H51 (≠ N56), R71 (≠ V76), I72 (≠ A77), G73 (≠ A78), S74 (≠ T79), G75 (= G80), R240 (= R238), H289 (= H288), W292 (= W291)
- binding nicotinamide-adenine-dinucleotide: S74 (≠ T79), G75 (= G80), T102 (≠ V107), I154 (≠ L158), G155 (= G159), F156 (≠ H160), G157 (= G161), R158 (≠ E162), T159 (≠ L163), Y177 (≠ G181), D178 (≠ Q182), P179 (= P184), Y180 (≠ G185), H210 (= H208), C211 (= C209), N212 (≠ P210), N214 (= N212), N217 (≠ T215), A238 (≠ T236), A239 (= A237), R240 (= R238), D264 (= D262), H289 (= H288), A291 (= A290), W292 (= W291)
P56545 C-terminal-binding protein 2; CtBP2 from Homo sapiens (Human)
33% identity, 84% coverage: 52:320/321 of query aligns to 79:371/445 of P56545