Comparing PP_0873 FitnessBrowser__Putida:PP_0873 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 17 hits to proteins with known functional sites (download)
Q9I6J1 Putrescine-binding periplasmic protein SpuD from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
56% identity, 100% coverage: 1:358/359 of query aligns to 2:366/367 of Q9I6J1
Q9I6J0 Spermidine-binding periplasmic protein SpuE from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see paper)
56% identity, 99% coverage: 2:358/359 of query aligns to 7:364/365 of Q9I6J0
3ttmA Crystal structure of spud in complex with putrescine (see paper)
57% identity, 94% coverage: 20:358/359 of query aligns to 3:341/341 of 3ttmA
3ttnA Crystal structures of polyamine receptors spud and spue from pseudomonas aeruginosa (see paper)
58% identity, 94% coverage: 21:356/359 of query aligns to 1:335/335 of 3ttnA
P31133 Putrescine-binding periplasmic protein PotF from Escherichia coli (strain K12) (see 3 papers)
55% identity, 99% coverage: 5:358/359 of query aligns to 12:369/370 of P31133
Sites not aligning to the query:
6ye7A E.Coli's putrescine receptor potf complexed with cadaverine (see paper)
56% identity, 94% coverage: 20:358/359 of query aligns to 2:341/341 of 6ye7A
6ye6A E.Coli's putrescine receptor potf complexed with agmatine (see paper)
56% identity, 94% coverage: 20:358/359 of query aligns to 2:341/341 of 6ye6A
6ye0B E.Coli's putrescine receptor potf complexed with putrescine (see paper)
56% identity, 94% coverage: 20:358/359 of query aligns to 2:341/341 of 6ye0B
1a99A Putrescine receptor (potf) from e. Coli (see paper)
56% identity, 94% coverage: 20:358/359 of query aligns to 2:341/341 of 1a99A
7oywA E.Coli's putrescine receptor variant potf/d (4jdf) with mutations e39d f88l s247d in complex with spermidine (see paper)
55% identity, 94% coverage: 20:358/359 of query aligns to 2:341/348 of 7oywA
7oyxB E.Coli's putrescine receptor variant potf/d (4jdf) with mutations e39d y87s f88y s247d in complex with spermidine (see paper)
55% identity, 94% coverage: 20:358/359 of query aligns to 2:341/347 of 7oyxB
7oyvA E.Coli's putrescine receptor variant potf/d (4jdf) with mutations e39d f88a s247d in complex with spermidine (see paper)
55% identity, 94% coverage: 20:358/359 of query aligns to 2:341/341 of 7oyvA
Sites not aligning to the query:
P0AFK9 Spermidine/putrescine-binding periplasmic protein; SPBP from Escherichia coli (strain K12) (see 3 papers)
32% identity, 89% coverage: 11:331/359 of query aligns to 18:321/348 of P0AFK9
Sites not aligning to the query:
1poy1 Spermidine/putrescine-binding protein complexed with spermidine (dimer form) (see paper)
33% identity, 87% coverage: 21:331/359 of query aligns to 3:296/323 of 1poy1
Sites not aligning to the query:
4eqbA 1.5 angstrom crystal structure of spermidine/putrescine abc transporter substrate-binding protein potd from streptococcus pneumoniae strain canada mdr_19a in complex with calcium and hepes
30% identity, 91% coverage: 19:343/359 of query aligns to 1:306/323 of 4eqbA
Sites not aligning to the query:
7xjnA Structure of vcpotd1 in complex with norspermidine
28% identity, 87% coverage: 20:331/359 of query aligns to 3:296/322 of 7xjnA
Sites not aligning to the query:
6hlyA Structure in p212121 form of the pbp agtb in complex with agropinic acid from a.Tumefacien r10 (see paper)
23% identity, 82% coverage: 39:334/359 of query aligns to 27:293/320 of 6hlyA
Sites not aligning to the query:
>PP_0873 FitnessBrowser__Putida:PP_0873
MRTFLLAPLMLAASVASAAETVKIYNWSSYVAPDTLKNFQQASGIVPTYDVYDSNETLDG
KLMTGNSGYDVVFPSNHFMARQIQGKALKRLDKSKLPNWHNLNPVLLKALEVNDPGNQYG
FPYLWGSTGIGYNIDKVKAVLGDNAPVDSWDLIFKPEYMSKLKSCGVAVLDNGPELLPIA
LHYLGLPHHSQDPKDYEKAKDLLMKVRPYISYFHSSKYTGDLANGDICVVVGFSGDVLQA
KNRADEANNGVKVGYSIPKEGAPMWFDMVAMPVDAPDEKAGYAYMNYLLQPEVMANISNH
VQYANGNLKADGLVDPAMKGNTMIYPSDEVMGKLYALEAMPAKIDRIRTRIWTSIKAGN
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory