Comparing PP_0879 FitnessBrowser__Putida:PP_0879 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
41% identity, 99% coverage: 1:320/322 of query aligns to 1:328/330 of P0AAH4
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
37% identity, 93% coverage: 11:308/322 of query aligns to 5:313/326 of Q8RDH4
Sites not aligning to the query:
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
37% identity, 93% coverage: 11:308/322 of query aligns to 4:302/310 of 4fwiB
Sites not aligning to the query:
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
35% identity, 79% coverage: 3:256/322 of query aligns to 3:247/250 of 7z18I
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
35% identity, 79% coverage: 3:256/322 of query aligns to 3:247/253 of 7z15I
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
35% identity, 79% coverage: 3:256/322 of query aligns to 3:247/250 of 7z16I
3c4jA Abc protein artp in complex with atp-gamma-s
31% identity, 80% coverage: 1:256/322 of query aligns to 1:241/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
31% identity, 80% coverage: 1:256/322 of query aligns to 1:241/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
31% identity, 80% coverage: 1:256/322 of query aligns to 1:241/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
31% identity, 80% coverage: 1:256/322 of query aligns to 1:241/242 of 2oljA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
34% identity, 79% coverage: 3:256/322 of query aligns to 2:239/241 of 4u00A
5xu1B Structure of a non-canonical abc transporter from streptococcus pneumoniae r6 (see paper)
36% identity, 69% coverage: 3:225/322 of query aligns to 3:215/226 of 5xu1B
7w78A Heme exporter hrtba in complex with mg-amppnp (see paper)
38% identity, 72% coverage: 3:234/322 of query aligns to 4:218/218 of 7w78A
7w79A Heme exporter hrtba in complex with mn-amppnp (see paper)
38% identity, 71% coverage: 3:232/322 of query aligns to 4:216/216 of 7w79A
7arlD Lolcde in complex with lipoprotein and adp (see paper)
36% identity, 69% coverage: 3:223/322 of query aligns to 2:213/222 of 7arlD
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
36% identity, 69% coverage: 3:223/322 of query aligns to 5:216/233 of P75957
7mdyC Lolcde nucleotide-bound
36% identity, 69% coverage: 3:223/322 of query aligns to 2:213/226 of 7mdyC
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
32% identity, 83% coverage: 3:270/322 of query aligns to 1:261/343 of P30750
Sites not aligning to the query:
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
36% identity, 69% coverage: 3:223/322 of query aligns to 4:215/229 of 7v8iD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
32% identity, 83% coverage: 3:270/322 of query aligns to 2:262/344 of 3tuzC
Sites not aligning to the query:
>PP_0879 FitnessBrowser__Putida:PP_0879
MSLLQINNLNVRFGDANAVPVVDGLDLKVDAGEILAIVGESGSGKSVTMMALMGLIDAPG
RITADSLTFDGTDMLKLSGRQRRKVVGKDIAMVFQDPMTALNPSYTVGFQIEEVLRQHLG
LKGKAARQRALELLKKVEIPAAESRLDAYPHQLSGGMSQRVAIAMAIAGEPKLLIADEPT
TALDVTIQAQIMELLVNLQKERNMALILITHDLAVVAETARRVCVMYAGQAVEVGQVPEL
FDVPAHPYSEALLAAIPEHSIGAERLATLPGIVPGRYDRPVGCLLSPRCPYVQDNCRRQR
PPLDPQAHSLVRCFYPLNQEVA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory