Comparing PP_0950 FitnessBrowser__Putida:PP_0950 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
O31645 PTS system mannose-specific EIIBCA component; EIIBCA-Man; EII-Man; EC 2.7.1.191 from Bacillus subtilis (strain 168) (see 2 papers)
23% identity, 97% coverage: 3:151/154 of query aligns to 501:650/650 of O31645
Sites not aligning to the query:
C0H3V2 Mannitol-specific phosphotransferase enzyme IIA component; EIIA; EIII; PTS system mannitol-specific EIIA component from Bacillus subtilis (strain 168) (see paper)
29% identity, 71% coverage: 43:151/154 of query aligns to 37:143/143 of C0H3V2
>PP_0950 FitnessBrowser__Putida:PP_0950
MIRLETILTPGRSLVNVPGGSKKRALEKVATVIADQVPELEMQDVFEKLVAREKLGSTGF
GNGIAIPHCRLEGCSAPVSALLHLEAPIDYDAIDGAPVDLLFVLLVPEAATDAHLELLRQ
IASMLDRKEVRDRLRAATSNEALFQVVLDVQNEH
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory