Comparing PP_1015 FitnessBrowser__Putida:PP_1015 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 14 hits to proteins with known functional sites (download)
5dvjA Crystal structure of galactose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86 (see paper)
69% identity, 94% coverage: 28:428/428 of query aligns to 3:396/396 of 5dvjA
5dviA High resolution crystal structure of glucose complexed periplasmic glucose binding protein (ppgbp) from p. Putida csv86 (see paper)
69% identity, 94% coverage: 28:428/428 of query aligns to 3:396/396 of 5dviA
8hqqA Crystal structure of the glucose-binding protein sar11_0769 from "candidatus pelagibacter ubique" htcc1062 bound to glucose
49% identity, 88% coverage: 31:407/428 of query aligns to 6:378/398 of 8hqqA
4r2bA Crystal structure of sugar transporter oant_3817 from ochrobactrum anthropi, target efi-510528, with bound glucose
44% identity, 94% coverage: 27:428/428 of query aligns to 4:395/395 of 4r2bA
2b3fA Thermus thermophilus glucose/galactose binding protein bound with galactose (see paper)
31% identity, 82% coverage: 30:380/428 of query aligns to 3:346/392 of 2b3fA
Sites not aligning to the query:
2b3bC Thermus thermophilus glucose/galactose binding protein with bound glucose (see paper)
31% identity, 82% coverage: 30:380/428 of query aligns to 3:346/392 of 2b3bC
Sites not aligning to the query:
2b3bA Thermus thermophilus glucose/galactose binding protein with bound glucose (see paper)
31% identity, 82% coverage: 30:380/428 of query aligns to 3:346/392 of 2b3bA
Sites not aligning to the query:
7ehqA Chitin oligosaccharide binding protein (see paper)
31% identity, 47% coverage: 76:276/428 of query aligns to 55:254/406 of 7ehqA
Sites not aligning to the query:
7c0oB Crystal structure of a dinucleotide-binding protein (y56f) of abc transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (see paper)
26% identity, 93% coverage: 22:421/428 of query aligns to 10:390/397 of 7c0oB
7c0kA Crystal structure of a dinucleotide-binding protein of abc transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (form ii) (see paper)
26% identity, 93% coverage: 22:421/428 of query aligns to 10:390/396 of 7c0kA
7c0kB Crystal structure of a dinucleotide-binding protein of abc transporter endogenously bound to uridylyl-3'-5'-phospho-guanosine (form ii) (see paper)
26% identity, 93% coverage: 22:421/428 of query aligns to 11:391/397 of 7c0kB
4c1tA Structure of the xylo-oligosaccharide specific solute binding protein from bifidobacterium animalis subsp. Lactis bl-04 in complex with arabinoxylotriose (see paper)
31% identity, 35% coverage: 123:273/428 of query aligns to 84:248/396 of 4c1tA
Sites not aligning to the query:
3oo6A Crystal structures and biochemical characterization of the bacterial solute receptor acbh reveal an unprecedented exclusive substrate preference for b-d-galactopyranose (see paper)
27% identity, 45% coverage: 78:271/428 of query aligns to 50:238/390 of 3oo6A
Sites not aligning to the query:
6fuvA Structure of a manno-oligosaccharide specific solute binding protein, blmnbp2 from bifidobacterium animalis subsp. Lactis atcc 27673 in complex with mannotriose (see paper)
27% identity, 40% coverage: 126:297/428 of query aligns to 113:292/427 of 6fuvA
Sites not aligning to the query:
>PP_1015 FitnessBrowser__Putida:PP_1015
MNSTLRLAAAISFASLIPLGAQAADAKGSVEVVHWWTSGGEKAAVDVLKAQVEKDGFIWK
DGAVAGGGGATAMTVLKSRAVAGNPPGVAQIKGPDIQDWAATGLLDADVLKDVAKEGKWD
SLLDKKVADTVKYDGDYVAVPVNIHRINWLWINPEVFKKAGIDKAPTTLDEFYAAADKLK
AAGFIPLAHGGQPWQDSTVFESVVLSVMGVDGYKKALVDLDSATLTGPQMVKALTELKKV
ATYMDPDGKGQDWNLEAAKVINGKAGMQIMGDWAKSEWTLAKKTAGKDYQCVPFPGTDKS
FLYNIDSLVVFKQNNAGTSAGQQDIARKVLGEDFQKVFSINKGSIPVRNDMLADMGKYGF
DACAQTSAKDFLADAKTGGLQPSMAHNMATTLAVQGAFFDVVTNYINDPKADPADAAKKL
AAAIKAAQ
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory