Comparing PP_1024 FitnessBrowser__Putida:PP_1024 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 12 hits to proteins with known functional sites (download)
P00885 2-dehydro-3-deoxy-phosphogluconate aldolase; KDPG-aldolase; Phospho-2-dehydro-3-deoxygluconate aldolase; Phospho-2-keto-3-deoxygluconate aldolase; EC 4.1.2.14 from Pseudomonas putida (Arthrobacter siderocapsulatus) (see paper)
98% identity, 96% coverage: 10:235/235 of query aligns to 1:226/226 of P00885
1mxsA Crystal structure of 2-keto-3-deoxy-6-phosphogluconate (kdpg) aldolase from pseudomonas putida. (see paper)
98% identity, 92% coverage: 20:235/235 of query aligns to 1:216/216 of 1mxsA
1euaA Schiff base intermediate in kdpg aldolase from escherichia coli (see paper)
49% identity, 77% coverage: 48:229/235 of query aligns to 27:208/213 of 1euaA
P0A955 KHG/KDPG aldolase; EC 4.1.3.16; EC 4.1.2.14 from Escherichia coli (strain K12) (see 3 papers)
49% identity, 77% coverage: 48:229/235 of query aligns to 27:208/213 of P0A955
1wauA Structure of kdpg aldolase e45n mutant (see paper)
49% identity, 77% coverage: 48:229/235 of query aligns to 27:208/213 of 1wauA
2c0aB Mechanism of the class i kdpg aldolase (see paper)
49% identity, 77% coverage: 48:229/235 of query aligns to 28:209/214 of 2c0aB
Sites not aligning to the query:
6oviA Crystal structure of kdpg aldolase from legionella pneumophila with pyruvate captured at low ph as a covalent carbinolamine intermediate
48% identity, 83% coverage: 31:226/235 of query aligns to 7:203/210 of 6oviA
3vcrA Crystal structure of a putative kdpg (2-keto-3-deoxy-6- phosphogluconate) aldolase from oleispira antarctica (see paper)
42% identity, 83% coverage: 38:233/235 of query aligns to 14:215/216 of 3vcrA
5xsfA Crystal structure of the 2-keto-3-deoxy-6-phosphogluconate aldolase of zymomonas mobilis zm4 with 3-phosphoglycerate
41% identity, 86% coverage: 29:231/235 of query aligns to 5:203/209 of 5xsfA
1wa3D Mechanism of the class i kdpg aldolase (see paper)
31% identity, 75% coverage: 28:203/235 of query aligns to 1:175/203 of 1wa3D
Sites not aligning to the query:
Q6BF16 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; 2-oxo-3-deoxygalactonate 6-phosphate aldolase; 6-phospho-2-dehydro-3-deoxygalactonate aldolase; 6-phospho-2-keto-3-deoxygalactonate aldolase; KDPGal; EC 4.1.2.21 from Escherichia coli (strain K12) (see paper)
28% identity, 66% coverage: 39:194/235 of query aligns to 7:166/205 of Q6BF16
2v82A Kdpgal complexed to kdpgal (see paper)
28% identity, 66% coverage: 39:194/235 of query aligns to 6:165/205 of 2v82A
Sites not aligning to the query:
>PP_1024 FitnessBrowser__Putida:PP_1024
MPMSQGSTVMTTLERPQPKLSMADKAARIDAICKKARILPVITIAREEDILPLADALAAG
GIRTLEVTLRSQHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTPGITQD
ILEAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEISGGVAAIKAFGGPFGDIRFC
PTGGVNPANVRNYMALPNVMCVGGTWMLDSSWIKNGDWARIEACSAEAMALLDAN
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory