Comparing PP_1073 FitnessBrowser__Putida:PP_1073 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 7 hits to proteins with known functional sites (download)
2qcuB Crystal structure of glycerol-3-phosphate dehydrogenase from escherichia coli (see paper)
56% identity, 91% coverage: 40:508/514 of query aligns to 27:496/501 of 2qcuB
Sites not aligning to the query:
2r46A Crystal structure of escherichia coli glycerol-3-phosphate dehydrogenase in complex with 2-phosphopyruvic acid. (see paper)
57% identity, 90% coverage: 40:501/514 of query aligns to 27:489/495 of 2r46A
Sites not aligning to the query:
2r45A Crystal structure of escherichia coli glycerol-3-phosphate dehydrogenase in complex with 2-phospho-d-glyceric acid (see paper)
57% identity, 90% coverage: 40:501/514 of query aligns to 27:489/495 of 2r45A
Sites not aligning to the query:
Q9SS48 Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial; Protein SUGAR-DEPENDENT 6; EC 1.1.5.3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
30% identity, 94% coverage: 18:502/514 of query aligns to 75:588/629 of Q9SS48
2rgoB Structure of alpha-glycerophosphate oxidase from streptococcus sp.: A template for the mitochondrial alpha-glycerophosphate dehydrogenase (see paper)
31% identity, 66% coverage: 39:378/514 of query aligns to 39:386/530 of 2rgoB
Sites not aligning to the query:
2rgoA Structure of alpha-glycerophosphate oxidase from streptococcus sp.: A template for the mitochondrial alpha-glycerophosphate dehydrogenase (see paper)
30% identity, 66% coverage: 39:378/514 of query aligns to 41:394/557 of 2rgoA
Sites not aligning to the query:
3da1A X-ray structure of the glycerol-3-phosphate dehydrogenase from bacillus halodurans complexed with fad. Northeast structural genomics consortium target bhr167.
27% identity, 88% coverage: 34:483/514 of query aligns to 36:442/496 of 3da1A
Sites not aligning to the query:
>PP_1073 FitnessBrowser__Putida:PP_1073
MPVSQPVSSQPPTANCYDLAVIGGGINGVGIAADAAGRGLKVFLCEKDDLAQHTSSASSK
LIHGGLRYLEHYEFRLVREALAEREVLLAKAPHIVKPMRFVLPHRPHLRPAWMIRAGLFL
YDHLGKRKRLGASRSLRFGPGYPLKPAITRGFEYADCAVDDARLVVLNAMAARELGAHIR
TRTRCLRAERVEGLWQVELQHADGSLQTIHARALVNAAGPWVASFIKDDLKLDAPYGIRL
IQGSHIIVPRLYEGEHAYILQNEDQRIVFCIPYLDRFTLIGTTDREYSGDPAAVAITEQE
THYLLKVVNEHFNHQLSQADILHTYSGVRPLCNDESDNPSAVTRDYTLALSAEVGQAPLL
SVFGGKLTTYRKLAESAMAELKPFFTQMRAPWTASAPLPGAEGMTTVQALIDAVLARCGW
LPVDLAKRWVLTYGSRVWRLLDGVHGPEDLGQAIGAGLFTREVDYLLEEEWAEQTADIIW
RRTKLGLSLTAQEQMALEAYLQQARKVRANSRAA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory