SitesBLAST
Comparing PP_1481 PP_1481 medium chain aldehyde dehydrogenase to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P77674 Gamma-aminobutyraldehyde dehydrogenase; ABALDH; 1-pyrroline dehydrogenase; 4-aminobutanal dehydrogenase; 5-aminopentanal dehydrogenase; EC 1.2.1.19; EC 1.2.1.- from Escherichia coli (strain K12) (see paper)
71% identity, 100% coverage: 1:474/474 of query aligns to 1:474/474 of P77674
1wndA Escherichia coli ydcw gene product is a medium-chain aldehyde dehydrogenase as determined by kinetics and crystal structure (see paper)
71% identity, 100% coverage: 1:474/474 of query aligns to 1:474/474 of 1wndA
- active site: N149 (= N149), K172 (= K172), E246 (= E246), C280 (= C280), E378 (= E378), D455 (= D455)
- binding calcium ion: G249 (= G249), K250 (= K250), A251 (= A251), G405 (= G405), L406 (= L406), A407 (= A407), Y427 (= Y427)
1wnbB Escherichia coli ydcw gene product is a medium-chain aldehyde dehydrogenase (complexed with nadh and betaine aldehyde) (see paper)
71% identity, 100% coverage: 1:474/474 of query aligns to 1:474/474 of 1wnbB
- active site: N149 (= N149), K172 (= K172), E246 (= E246), C280 (= C280), E378 (= E378), D455 (= D455)
- binding betaine aldehyde: D279 (= D279), F436 (= F436), L438 (= L438)
- binding 1,4-dihydronicotinamide adenine dinucleotide: I145 (= I145), A146 (= A146), W148 (= W148), K172 (= K172), G204 (= G204), G208 (= G208), D209 (≠ N209), T223 (= T223), G224 (= G224), S225 (= S225), T228 (= T228), H231 (= H231), G248 (= G248), E378 (= E378)
1wnbA Escherichia coli ydcw gene product is a medium-chain aldehyde dehydrogenase (complexed with nadh and betaine aldehyde) (see paper)
71% identity, 100% coverage: 1:474/474 of query aligns to 1:474/474 of 1wnbA
- active site: N149 (= N149), K172 (= K172), E246 (= E246), C280 (= C280), E378 (= E378), D455 (= D455)
- binding 1,4-dihydronicotinamide adenine dinucleotide: I145 (= I145), A146 (= A146), W148 (= W148), K172 (= K172), G204 (= G204), G208 (= G208), D209 (≠ N209), G224 (= G224), S225 (= S225), T228 (= T228), H231 (= H231), G248 (= G248), F380 (= F380)
4f3xA Crystal structure of putative aldehyde dehydrogenase from sinorhizobium meliloti 1021 complexed with NAD
63% identity, 100% coverage: 1:474/474 of query aligns to 2:475/476 of 4f3xA
- active site: N150 (= N149), K173 (= K172), E247 (= E246), C281 (= C280), E379 (= E378), D456 (= D455)
- binding nicotinamide-adenine-dinucleotide: I146 (= I145), A147 (= A146), P148 (= P147), W149 (= W148), K173 (= K172), E176 (= E175), G205 (= G204), G209 (= G208), I213 (= I212), I223 (≠ L222), G225 (= G224), D226 (≠ S225), T229 (= T228), G249 (= G248), C281 (= C280), Q328 (≠ H327), R331 (≠ K330), E379 (= E378), F381 (= F380)
4o6rA Crystal structure of a putative aldehyde dehydrogenase from burkholderia cenocepacia
43% identity, 100% coverage: 1:473/474 of query aligns to 2:478/489 of 4o6rA
- active site: N150 (= N149), K173 (= K172), E248 (= E246), C282 (= C280), E383 (= E378), E460 (≠ D455)
- binding adenosine monophosphate: I146 (= I145), V147 (≠ A146), K173 (= K172), G206 (= G204), G210 (= G208), Q211 (≠ N209), F224 (≠ L222), G226 (= G224), S227 (= S225), T230 (= T228), R233 (≠ H231)
4neaA 1.90 angstrom resolution crystal structure of betaine aldehyde dehydrogenase (betb) from staphylococcus aureus in complex with NAD+ and bme-free cys289 (see paper)
40% identity, 95% coverage: 21:471/474 of query aligns to 37:492/505 of 4neaA
- active site: N166 (= N149), K189 (= K172), E264 (= E246), C298 (= C280), E399 (= E378), E476 (≠ D455)
- binding nicotinamide-adenine-dinucleotide: P164 (= P147), K189 (= K172), E192 (= E175), G222 (= G204), G226 (= G208), G242 (= G224), G243 (≠ S225), T246 (= T228), H249 (= H231), I250 (= I232), C298 (= C280), E399 (= E378), F401 (= F380)
4go4A Crystal structure of pnpe in complex with nicotinamide adenine dinucleotide
41% identity, 100% coverage: 1:473/474 of query aligns to 1:476/487 of 4go4A
- active site: N149 (= N149), K172 (= K172), E247 (= E246), C281 (= C280), E381 (= E378), E458 (≠ D455)
- binding nicotinamide-adenine-dinucleotide: I145 (= I145), V146 (≠ A146), W148 (= W148), N149 (= N149), F154 (≠ M154), K172 (= K172), G205 (= G204), G209 (= G208), Q210 (≠ N209), F223 (≠ L222), T224 (= T223), G225 (= G224), S226 (= S225), T229 (= T228), E247 (= E246), G249 (= G248), C281 (= C280), E381 (= E378), F383 (= F380)
5gtlA NADPH complex structure of aldehyde dehydrogenase from bacillus cereus
37% identity, 99% coverage: 2:472/474 of query aligns to 16:488/491 of 5gtlA
- active site: N165 (= N149), K188 (= K172), E263 (= E246), C297 (= C280), E394 (= E378), E471 (≠ D455)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: I161 (= I145), P163 (= P147), K188 (= K172), A190 (≠ S174), E191 (= E175), Q192 (≠ L176), G221 (= G204), G225 (= G208), G241 (= G224), S242 (= S225), T245 (= T228), L264 (= L247), C297 (= C280), E394 (= E378), F396 (= F380)
5gtkA NAD+ complex structure of aldehyde dehydrogenase from bacillus cereus
37% identity, 99% coverage: 2:472/474 of query aligns to 16:488/491 of 5gtkA
- active site: N165 (= N149), K188 (= K172), E263 (= E246), C297 (= C280), E394 (= E378), E471 (≠ D455)
- binding nicotinamide-adenine-dinucleotide: I161 (= I145), I162 (≠ A146), P163 (= P147), W164 (= W148), K188 (= K172), E191 (= E175), G221 (= G204), G225 (= G208), A226 (≠ N209), F239 (≠ L222), G241 (= G224), S242 (= S225), T245 (= T228), Y248 (≠ H231), L264 (= L247), C297 (= C280), Q344 (≠ H327), R347 (≠ K330), E394 (= E378), F396 (= F380)
Q9HTJ1 NAD/NADP-dependent betaine aldehyde dehydrogenase; BADH; EC 1.2.1.8 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) (see 2 papers)
39% identity, 100% coverage: 2:473/474 of query aligns to 6:482/490 of Q9HTJ1
- GAWN 150:153 (≠ APWN 146:149) binding
- K162 (= K158) active site, Charge relay system
- KPSE 176:179 (= KPSE 172:175) binding
- G209 (= G204) binding
- GTST 230:233 (≠ SIPT 225:228) binding
- E252 (= E246) active site, Proton acceptor
- C286 (= C280) binding covalent; modified: Cysteine sulfenic acid (-SOH)
- E387 (= E378) binding
- E464 (≠ D455) active site, Charge relay system
4cazA Crystal structure of betaine aldehyde dehydrogenase from pseudomonas aeruginosa in complex with nadh
39% identity, 100% coverage: 2:473/474 of query aligns to 5:481/489 of 4cazA
- active site: N152 (= N149), K175 (= K172), E251 (= E246), C285 (= C280), E386 (= E378), E463 (≠ D455)
- binding [[(2R,3S,4R,5R)-5-[(3R)-3-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanidyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphate: I148 (= I145), G149 (≠ A146), W151 (= W148), N152 (= N149), K175 (= K172), E178 (= E175), G208 (= G204), G212 (= G208), F226 (≠ L222), T227 (= T223), G228 (= G224), G229 (≠ S225), T232 (= T228), V236 (≠ I232), E251 (= E246), L252 (= L247), C285 (= C280), E386 (= E378), F388 (= F380)
2woxA Betaine aldehyde dehydrogenase from pseudomonas aeruginosa with NAD(p) h-catalytic thiol adduct. (see paper)
39% identity, 100% coverage: 2:473/474 of query aligns to 5:481/489 of 2woxA
- active site: N152 (= N149), K175 (= K172), E251 (= E246), C285 (= C280), E386 (= E378), E463 (≠ D455)
- binding nadph dihydro-nicotinamide-adenine-dinucleotide phosphate: I148 (= I145), G149 (≠ A146), W151 (= W148), N152 (= N149), K175 (= K172), S177 (= S174), E178 (= E175), G208 (= G204), G212 (= G208), F226 (≠ L222), T227 (= T223), G228 (= G224), G229 (≠ S225), T232 (= T228), V236 (≠ I232), E251 (= E246), L252 (= L247), C285 (= C280), E386 (= E378), F388 (= F380)
2wmeA Crystallographic structure of betaine aldehyde dehydrogenase from pseudomonas aeruginosa (see paper)
39% identity, 100% coverage: 2:473/474 of query aligns to 5:481/489 of 2wmeA
- active site: N152 (= N149), K175 (= K172), E251 (= E246), C285 (= C280), E386 (= E378), E463 (≠ D455)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: G149 (≠ A146), W151 (= W148), K175 (= K172), S177 (= S174), E178 (= E175), G208 (= G204), G212 (= G208), F226 (≠ L222), G228 (= G224), G229 (≠ S225), T232 (= T228), V236 (≠ I232)
O94788 Retinal dehydrogenase 2; RALDH 2; RalDH2; Aldehyde dehydrogenase family 1 member A2; ALDH1A2; Retinaldehyde-specific dehydrogenase type 2; RALDH(II); EC 1.2.1.36 from Homo sapiens (Human) (see 6 papers)
39% identity, 99% coverage: 3:473/474 of query aligns to 38:512/518 of O94788
- E50 (≠ Q15) to G: in dbSNP:rs34266719
- A110 (= A71) to V: in dbSNP:rs35365164
- Q182 (≠ S144) to K: in DIH4; decreased retinoic acid biosynthetic process
- IPW 184:186 (≠ APW 146:148) binding
- KPAE 210:213 (≠ KPSE 172:175) binding
- STE 264:266 (≠ SIP 225:227) binding
- C320 (= C280) active site, Nucleophile
- R347 (≠ L307) to H: in DIH4; decreased expression; dbSNP:rs141245344
- V348 (≠ K308) to I: in dbSNP:rs4646626
- KQYNK 366:370 (≠ QHRDK 326:330) binding
- A383 (≠ I344) to T: in DIH4; uncertain significance; dbSNP:rs749124508
- E417 (= E378) binding
- E436 (= E397) to K: in dbSNP:rs34744827
- S461 (≠ A422) to Y: in DIH4; decreased retinoic acid biosynthetic process
6b5hA Aldh1a2 liganded with NAD and 1-(4-cyanophenyl)-n-(3-fluorophenyl)-3- [4-(methylsulfonyl)phenyl]-1h-pyrazole-4-carboxamide (compound cm121) (see paper)
39% identity, 99% coverage: 3:473/474 of query aligns to 12:486/492 of 6b5hA
- active site: N161 (= N149), E260 (= E246), C294 (= C280), E468 (≠ D455)
- binding 1-(4-cyanophenyl)-N-(3-fluorophenyl)-3-[4-(methylsulfonyl)phenyl]-1H-pyrazole-4-carboxamide: V112 (≠ D99), G116 (≠ A103), F162 (≠ Y150), W169 (= W157), Q284 (≠ T270), F288 (≠ Y274), T295 (= T281), N449 (≠ F436), L451 (= L438), N452 (≠ V439), F457 (≠ H444)
- binding nicotinamide-adenine-dinucleotide: I157 (= I145), I158 (≠ A146), W160 (= W148), N161 (= N149), K184 (= K172), G217 (= G204), G221 (= G208), F235 (≠ L222), T236 (= T223), G237 (= G224), S238 (= S225), V241 (≠ T228), E260 (= E246), L261 (= L247), C294 (= C280), F393 (= F380)
6b5gA Aldh1a2 liganded with NAD and (3-ethoxythiophen-2-yl){4-[4-nitro-3- (pyrrolidin-1-yl)phenyl]piperazin-1-yl}methanone (compound 6-118) (see paper)
39% identity, 99% coverage: 3:473/474 of query aligns to 12:486/492 of 6b5gA
- active site: N161 (= N149), E260 (= E246), C294 (= C280), E468 (≠ D455)
- binding (3-ethoxythiophen-2-yl){4-[4-nitro-3-(pyrrolidin-1-yl)phenyl]piperazin-1-yl}methanone: F162 (≠ Y150), L165 (≠ M153), W169 (= W157), F288 (≠ Y274), C293 (≠ D279), C294 (= C280), T295 (= T281), N449 (≠ F436), L451 (= L438)
- binding nicotinamide-adenine-dinucleotide: I157 (= I145), I158 (≠ A146), P159 (= P147), W160 (= W148), N161 (= N149), M166 (= M154), K184 (= K172), E187 (= E175), G217 (= G204), G221 (= G208), F235 (≠ L222), T236 (= T223), G237 (= G224), S238 (= S225), V241 (≠ T228), E260 (= E246), L261 (= L247), C294 (= C280), E391 (= E378), F393 (= F380)
6aljA Aldh1a2 liganded with NAD and compound win18,446 (see paper)
39% identity, 99% coverage: 3:473/474 of query aligns to 12:486/492 of 6aljA
- active site: N161 (= N149), E260 (= E246), C294 (= C280), E468 (≠ D455)
- binding N,N'-(octane-1,8-diyl)bis(2,2-dichloroacetamide): G116 (≠ A103), F162 (≠ Y150), L165 (≠ M153), M166 (= M154), W169 (= W157), E260 (= E246), C293 (≠ D279), C294 (= C280), L451 (= L438), N452 (≠ V439), A453 (≠ S440)
- binding nicotinamide-adenine-dinucleotide: I157 (= I145), I158 (≠ A146), P159 (= P147), W160 (= W148), N161 (= N149), K184 (= K172), E187 (= E175), G217 (= G204), G221 (= G208), F235 (≠ L222), G237 (= G224), S238 (= S225), V241 (≠ T228), Q341 (≠ H327), K344 (= K330), E391 (= E378), F393 (= F380)
8skfA Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (lattice translocation disorder)
39% identity, 100% coverage: 2:473/474 of query aligns to 13:489/497 of 8skfA
- binding calcium ion: T33 (≠ V21), I34 (≠ L22), D100 (≠ N88), V187 (≠ L176)
- binding nicotinamide-adenine-dinucleotide: I156 (= I145), G157 (≠ A146), A158 (≠ P147), W159 (= W148), K183 (= K172), E186 (= E175), G216 (= G204), G220 (= G208), T235 (= T223), G236 (= G224), G237 (≠ S225), S240 (≠ T228), K243 (≠ H231), E259 (= E246), C293 (= C280), F396 (= F380)
8vr1A Crystal structure of betaine aldehyde dehydrogenase (betb) from klebsiella aerogenes (ctp bound)
39% identity, 100% coverage: 2:473/474 of query aligns to 4:480/488 of 8vr1A
Query Sequence
>PP_1481 PP_1481 medium chain aldehyde dehydrogenase
MQTQMLINGQLVAGQGPAWTVLNPALGTALAQINEATEAQVDSAVRAADQAFDSWSQTSP
KERSQALLALADAIEAHGDELARLESQNCGKPLSAALNDEIPAIADVFRFFAGAARCLGG
SAAGEYLPGHTSMIRRDPLGVVASIAPWNYPLMMLAWKIAPALAAGNTVVIKPSELTPLT
ALRLGELAQDLLPPGVLNILFGRGQTVGNPLITHPKVRMVSLTGSIPTGAHIISATADSV
KRMHMELGGKAPVLVFDDADIDAAIDGIRTFGFYNAGQDCTAACRLYVQDGIYERFVERL
GKAVASLKPGLQESEETELGPLISAQHRDKVAGLVQRAIAQPHIRLVTGGKPIAGDGFFF
EPTVLADALQDDEIVRNEVFGPVVSVTRFTDEAQALEWANDSNYGLASSVWTRDTGRAHR
LAARLQYGCTWVNTHFMLVSEMPHGGQKHSGYGKDMSMYGLEDYTCVRHVMIKH
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory