Comparing PP_2080 FitnessBrowser__Putida:PP_2080 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 1 hits to proteins with known functional sites (download)
Q54VI3 Glutamate dehydrogenase 2; NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Dictyostelium discoideum (Social amoeba) (see paper)
25% identity, 27% coverage: 744:1186/1621 of query aligns to 483:896/1042 of Q54VI3
>PP_2080 FitnessBrowser__Putida:PP_2080
MAFFTAASKADFQHQLQAALAQHISEQSLPQVALFAEQFFGIISLDELTQRRLSDLAGCT
LSAWRIIERFDPEYPQVRVYNPDYERNGWQSTHTVVEVLHHDLPFLVDSVRTELNRRGYS
IHTLQTTVLSVRRGAKGELLELLPKGTQGEGVRYESLMYLEIDRCANAAELTVLTREIEQ
VLAEVRVVVADFEPMKAKLREVVAQVEQTAFGPAQNEKGEVKAFLEWLLDNHFTFLGYEE
FTVKGDADGGQMVYDEQSFLGLPRRLRVGLTAEELRIEDYAVAYLNEPLLLSFAKAALPS
RVHRPAYPDYVSIRQLDADGKVIKEHRFMGLYTSSVYGESVHAIPYIRVKVAEVERRSGF
DPKAHLGKELAQVLEVLPRDDLFQTPIDELFSTVMAIVQIQERNKIRVFLRKDPYGRFCY
CLAYVPREIYSTEVRQKIQQVLMERLKASDCEFWTFFSESVLARVQLILRVDPKNRIDID
PQQLEREVIQACRSWHDDYSALVVENFGEAQGTNILADFPKGFPAGYRERFAAHSAVVDL
QHVLNLSESKPLAMSFYQPLTQVGERILHCKLYHADTPLALSDVLPILENLGLRVLGEFP
YRLRHANGREYWIHDFAFTYSEGLSLDIQQLNDTLQDAFIHIVRGDAENDAFNRLVLTAG
LPWRDVALLRAYARYLKQIRLGFDLGYIASTLNNHTDIARELTRLFKTRFYLARKLTQDD
LDDKQQRLEQAILSALDDVQVLNEDRILRRYLDLIKATLRTNFYQPDANGQNKSYFSFKF
NPKLIPELPKPVPKFEIFVYSPRVEGVHLRFGNVARGGLRWSDREEDFRTEVLGLVKAQQ
VKNSVIVPVGAKGGFLPRRLPLGGSRDEIAAEGVACYRIFISGLLDITDNLKDGGVVPPA
NVVRHDDDDPYLVVAADKGTATFSDIANGIAIDYGFWLGDAFASGGSAGYDHKKMGITAR
GAWVGVQRHFRERGINVQEDPITVIGVGDMAGDVFGNGLLMSDKLQLVAAFNHLHIFIDP
NPDPATSFAERKRLFDLPRSAWSDYDTSIMSEGGGIFPRSAKSIAISPQMKERFAIEADR
LTPTELLNALLKAPVDLLWNGGIGTYVKASTESHADVGDKANDALRVNGNELRCKVVGEG
GNLGMTQLGRVEFGLNGGATNTDFIDNAGGVDCSDHEVNIKILLNEVVQGGDMTEKQRNQ
LLGSMTDEVAGLVLGNNYKQTQALSLAARRARERIAEYKRLMADLEARGKLDRAIEFLPS
EEQLAERLAAGQGLTRAELSVLISYSKIDLKEQLLKSLVPDDDYLTRDMETAFPPSLVSK
FAEAMRRHRLKREIVSTQIANDLVNNMGITFVQRLKESTGMSPANVAGAYVIVRDIFHLP
HWFRQIEALDYQVPAEIQLTLMDELMRLGRRATRWFLRSRRNEQDAGRDTAHFGPKIAQL
GLKLDELLEGPTRERWMVRYQGFVDAGVPELLARMVAGTSHLYTLLPIIEAADVTGHEPA
QVAKAFFAVGSALDLTWYLQEISNLPVENNWQALAREAFRDDIDLQQRAITISVLQMADA
PQDMDARVALWSEQHRGMVERWRAMLDDLRNATGTDYAMYAVANRELVDLAMSGQAAVVP
S
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory