Comparing PP_2336 FitnessBrowser__Putida:PP_2336 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P09339 Aconitate hydratase A; ACN; Aconitase; Aconitate/2-methylaconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.- from Bacillus subtilis (strain 168) (see 2 papers)
42% identity, 98% coverage: 11:851/862 of query aligns to 23:899/909 of P09339
Sites not aligning to the query:
Q9SIB9 Aconitate hydratase 3, mitochondrial; Aconitase 3; mACO1; Citrate hydro-lyase 3; EC 4.2.1.3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
42% identity, 95% coverage: 32:850/862 of query aligns to 129:980/990 of Q9SIB9
Sites not aligning to the query:
2b3xA Structure of an orthorhombic crystal form of human cytosolic aconitase (irp1) (see paper)
42% identity, 95% coverage: 31:851/862 of query aligns to 31:880/888 of 2b3xA
P21399 Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Ferritin repressor protein; Iron regulatory protein 1; IRP1; Iron-responsive element-binding protein 1; IRE-BP 1; EC 4.2.1.3 from Homo sapiens (Human) (see 2 papers)
42% identity, 95% coverage: 31:851/862 of query aligns to 32:881/889 of P21399
3snpA Crystal structure analysis of iron regulatory protein 1 in complex with ferritin h ire RNA (see paper)
42% identity, 95% coverage: 31:851/862 of query aligns to 31:842/850 of 3snpA
A0QX20 Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
44% identity, 54% coverage: 396:861/862 of query aligns to 468:942/943 of A0QX20
Sites not aligning to the query:
P19414 Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
28% identity, 91% coverage: 74:856/862 of query aligns to 89:775/778 of P19414
Sites not aligning to the query:
8acnA Crystal structures of aconitase with isocitrate and nitroisocitrate bound (see paper)
29% identity, 93% coverage: 54:855/862 of query aligns to 46:749/753 of 8acnA
1fghA Complex with 4-hydroxy-trans-aconitate (see paper)
29% identity, 93% coverage: 54:855/862 of query aligns to 46:749/753 of 1fghA
1amjA Steric and conformational features of the aconitase mechanism (see paper)
29% identity, 93% coverage: 54:855/862 of query aligns to 46:749/753 of 1amjA
1amiA Steric and conformational features of the aconitase mechanism (see paper)
29% identity, 93% coverage: 54:855/862 of query aligns to 46:749/753 of 1amiA
1acoA Crystal structure of aconitase with transaconitate bound (see paper)
29% identity, 93% coverage: 54:855/862 of query aligns to 46:749/753 of 1acoA
P20004 Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Bos taurus (Bovine) (see 2 papers)
29% identity, 93% coverage: 54:855/862 of query aligns to 74:777/780 of P20004
1nisA Crystal structure of aconitase with trans-aconitate and nitrocitrate bound (see paper)
29% identity, 93% coverage: 54:855/862 of query aligns to 46:749/753 of 1nisA
5acnA Structure of activated aconitase. Formation of the (4fe-4s) cluster in the crystal (see paper)
28% identity, 93% coverage: 54:855/862 of query aligns to 47:750/754 of 5acnA
1b0kA S642a:fluorocitrate complex of aconitase (see paper)
28% identity, 93% coverage: 54:855/862 of query aligns to 46:749/753 of 1b0kA
P16276 Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Sus scrofa (Pig) (see 3 papers)
28% identity, 93% coverage: 54:855/862 of query aligns to 74:777/781 of P16276
Sites not aligning to the query:
P39533 Homocitrate dehydratase, mitochondrial; Aconitase 2; EC 4.2.1.- from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
28% identity, 94% coverage: 40:851/862 of query aligns to 55:780/789 of P39533
4kp1A Crystal structure of ipm isomerase large subunit from methanococcus jannaschii (mj0499) (see paper)
24% identity, 42% coverage: 170:535/862 of query aligns to 99:417/423 of 4kp1A
Sites not aligning to the query:
4nqyA The reduced form of mj0499 (see paper)
24% identity, 42% coverage: 170:535/862 of query aligns to 86:404/409 of 4nqyA
Sites not aligning to the query:
>PP_2336 FitnessBrowser__Putida:PP_2336
MNTAYRKHLPGTDLDYFDARAAVEAIKPGAYDGLPYTSRVLAENLVRRCDPATLDASLSQ
LIERKRDLDFPWFPARVVCHDILGQTALVDLAGLRDAIADKGGDPAQVNPVVPVQLIVDH
SLAVECGGFDPQAFEKNRAIEDRRNEDRFHFINWTKKAFKNVDVIQPGNGIMHQINLEKM
SPVVHSDRGVAYPDTCVGTDSHTPHVDALGVIAIGVGGLEAENVMLGRASWMRLPEIVGV
ELTGKLAPNITATDLVLALTEFLRKQKVVGAYLEFHGEGARALTLGDRATISNMAPEYGA
TAAMFAIDQQTIDYLRLTGREEQQVKLVETYAKATGLWADSLGGAVYERTLSFDLSSVVR
NMAGPSNPHARVATSDLAAKGIAGSWEEVPGQMPDGAVIIAAITSCTNTSNPRNVIAAGL
IARNANKLGLTRKPWVKSSLAPGSKAVQLYLEEAGLEKELEQLGFGIVAFACTTCNGMSG
ALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIE
KDVLGVVDGKEIRLKDIWPSDEEIDAVVRAAVKPEQFRKVYIPMFAIEEDRGPKVAPLYD
WRPMSTYIRRPPYWEGALAGERTLRGMRPLAVLPDNITTDHLSPSNAIMLDSAAGEYLAK
MGLPEEDFNSYATHRGDHLTAQRATFANPKLFNEMVRNDDGSVKQGSLARIEPEGKVTRM
WEAIETYMQRKQPLIIVAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLVGMG
VLPLEFKPGTDRKTLGLDGSETYDVLGARTPRATLTLVVTRANGECLEVPVTCRLDTAEE
VSIYEAGGVLQRFAQDFLEATA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory