SitesBLAST
Comparing PP_2479 PP_2479 Cytochrome c family protein to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 6 hits to proteins with known functional sites (download)
Q47945 Alcohol dehydrogenase (quinone), cytochrome c subunit; ADH; Alcohol dehydrogenase (quinone), subunit II; Cytochrome c-553; Cytochrome c553; Ethanol:Q2 reductase; G3-ADH subunit II; Quinohemoprotein-cytochrome c complex; Ubiquinol oxidase; EC 1.1.5.5 from Gluconobacter oxydans (strain 621H) (Gluconobacter suboxydans) (see paper)
36% identity, 99% coverage: 3:403/407 of query aligns to 19:435/478 of Q47945
- Q37 (≠ A21) modified: Pyrrolidone carboxylic acid
Sites not aligning to the query:
7w2jC Cryo-em structure of membrane-bound fructose dehydrogenase from gluconobacter japonicus
35% identity, 92% coverage: 28:402/407 of query aligns to 1:386/418 of 7w2jC
- binding heme c: C13 (= C40), C16 (= C43), H17 (= H44), T42 (≠ P68), I44 (= I70), Y55 (≠ W81), L75 (≠ Y101), Y76 (= Y102), A78 (= A104), M79 (≠ F105), R122 (= R147), H161 (= H185), C162 (= C186), C165 (= C189), H166 (= H190), A191 (= A215), P192 (≠ Y216), R223 (≠ L248), P227 (= P252), M228 (= M253), V289 (≠ A311), C290 (= C312), C293 (= C315), H294 (= H316), Y305 (≠ Q326), Y306 (≠ T327), P307 (≠ A328), L309 (= L330), N312 (≠ L333), T313 (≠ K334), T314 (= T335), D322 (≠ N343), I327 (≠ L348), V331 (≠ H352), R333 (≠ A354), I340 (≠ R361), M342 (= M363), P343 (= P364), F345 (= F366)
8jejC Cryo-em structure of na-dithionite reduced membrane-bound fructose dehydrogenase from gluconobacter japonicus
34% identity, 92% coverage: 28:402/407 of query aligns to 1:400/413 of 8jejC
- binding heme c: C13 (= C40), C16 (= C43), H17 (= H44), T42 (≠ P68), I44 (= I70), F60 (= F86), L64 (= L90), L75 (≠ Y101), Y76 (= Y102), M79 (≠ F105), P80 (= P106), Y84 (= Y110), R122 (= R147), C162 (= C186), C165 (= C189), H166 (= H190), I186 (= I210), W189 (= W213), A191 (= A215), P192 (≠ Y216), I194 (= I218), W205 (= W229), Y213 (= Y237), R223 (≠ L248), M228 (= M253), V303 (≠ A311), C304 (= C312), C307 (= C315), H308 (= H316), Y320 (≠ T327), P321 (≠ A328), L323 (= L330), T327 (≠ K334), T328 (= T335), D336 (≠ N343), I341 (≠ L348), V345 (≠ H352), R347 (≠ A354), I354 (≠ R361), M356 (= M363), F359 (= F366), I376 (≠ L378)
- binding ubiquinone-10: M36 (≠ F62), P77 (= P103), S124 (≠ G149), W128 (= W153), C165 (= C189), L173 (≠ Q197)
Sites not aligning to the query:
8gy2B Cryo-em structure of membrane-bound alcohol dehydrogenase from gluconobacter oxydans
37% identity, 94% coverage: 23:403/407 of query aligns to 1:397/433 of 8gy2B
- binding heme c: C18 (= C40), C21 (= C43), H22 (= H44), T46 (≠ P68), I48 (= I70), Y59 (≠ W81), L68 (= L90), R73 (≠ G95), V79 (≠ Y101), Y80 (= Y102), M83 (≠ F105), F88 (≠ Y110), R126 (= R147), H165 (= H185), C166 (= C186), C169 (= C189), H170 (= H190), I201 (≠ N214), A202 (= A215), P203 (≠ Y216), L205 (≠ I218), W216 (= W229), F224 (≠ Y237), A234 (≠ G247), V235 (≠ L248), F236 (≠ S249), F236 (≠ S249), M239 (= M253), N301 (≠ A311), C302 (= C312), C305 (= C315), H306 (= H316), M316 (≠ Q326), F317 (≠ T327), P318 (≠ A328), L320 (= L330), P324 (≠ K334), G342 (= G346), S352 (≠ V359), V354 (≠ R361), M356 (= M363), F359 (= F366), M375 (= M382)
- binding ubiquinone-10: C21 (= C43), L34 (≠ V56), P39 (= P61), P81 (= P103), L129 (≠ M150), W132 (= W153), E168 (= E188), R173 (= R193), I197 (= I210), D241 (≠ E255)
Sites not aligning to the query:
8gy3A Cryo-em structure of membrane-bound aldehyde dehydrogenase from gluconobacter oxydans
34% identity, 88% coverage: 26:382/407 of query aligns to 39:407/440 of 8gy3A
- binding heme c: Y52 (≠ N39), C53 (= C40), C56 (= C43), H57 (= H44), S84 (≠ P68), I86 (= I70), W97 (= W81), F102 (= F86), L117 (≠ Y101), F121 (= F105), F126 (≠ Y110), R163 (= R147), C203 (= C186), C206 (= C189), H207 (= H190), A232 (vs. gap), P233 (vs. gap), L235 (vs. gap), W245 (= W229), Y253 (= Y237), L254 (= L238), G263 (= G247), S264 (≠ L248), M269 (= M253), Y292 (≠ L276), C337 (= C312), C340 (= C315), H341 (= H316), P353 (≠ M329), L355 (= L331), N358 (≠ K334), N359 (≠ T335), V372 (≠ I347), I377 (≠ H352), G382 (≠ A357), Q383 (≠ P358), I386 (≠ R361), M388 (= M363), F391 (= F366)
- binding ubiquinone-10: E55 (≠ A42), T76 (≠ L60), F78 (= F62), Y118 (= Y102), P119 (= P103), I160 (≠ F144), G166 (= G149), Q167 (≠ M150), F169 (= F152), W170 (= W153), H202 (= H185), R210 (= R193), L213 (≠ F196)
8hddB Complex structure of catalytic, small, and a partial electron transfer subunits from burkholderia cepacia fad glucose dehydrogenase
31% identity, 27% coverage: 292:402/407 of query aligns to 13:121/121 of 8hddB
- binding protoporphyrin ix containing fe: C30 (= C312), C33 (= C315), H34 (= H316), Y46 (≠ T327), P47 (≠ A328), T54 (= T335), V66 (≠ I347), I67 (≠ L348), R73 (≠ A354), I80 (≠ R361), M82 (= M363), P83 (= P364)
Query Sequence
>PP_2479 PP_2479 Cytochrome c family protein
MMKLISNVLTLASAALLAQAAYAQEDLLAKGEYLTRAANCVACHTVPGGQPFAGGVEFKL
PFGSLFSPNITPDPQTGIGAWTDDEFVSALQTGIGRDGKHYYPAFPYTSYSKMSRDDILA
IKGYLDSLQPVEQAPRENHIGFPFNQRWGMVFWNLLFLNDEPFQADSQRSAEWNRGKYLV
EGPGHCGECHSPRNLFQAVSSERSLAGNLIQGWNAYNISADPVHGIGAWPTDVLAGYLKD
GAAPGLGLSSGPMAEVVENSLRHLTDADRQAIAVFLKDSPPRSEGVPRPQQVTLAEPGSG
SALGNKLFAEACASCHRWDGTGNQSQTAMLLGLKTVNDPAASNLLGILLSGHGAADAPVN
RRMPSFGNIYTDQELAALSSFMLQRFGESGAQVSVPAVAKRRTESLH
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory