Comparing PP_2513 FitnessBrowser__Putida:PP_2513 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 7 hits to proteins with known functional sites (download)
6p3hC Crystal structure of ligu(k66m) bound to substrate (see paper)
61% identity, 96% coverage: 7:351/361 of query aligns to 6:351/352 of 6p3hC
6p3jB Crystal structure of ligu (see paper)
60% identity, 96% coverage: 7:351/361 of query aligns to 11:348/352 of 6p3jB
Sites not aligning to the query:
5k87A Crystal structure of malonate bound to methylaconitate isomerase prpf from shewanella oneidensis (see paper)
37% identity, 97% coverage: 3:353/361 of query aligns to 5:388/389 of 5k87A
2pvzA Crystal structure of methylaconitate isomerase prpf from shewanella oneidensis (see paper)
37% identity, 97% coverage: 3:353/361 of query aligns to 5:386/387 of 2pvzA
Q8EJW4 2-methyl-aconitate isomerase; Cis-trans isomerase; EC 5.3.3.- from Shewanella oneidensis (strain MR-1) (see paper)
36% identity, 97% coverage: 3:353/361 of query aligns to 9:396/397 of Q8EJW4
2pw0A Crystal structure of trans-aconitate bound to methylaconitate isomerase prpf from shewanella oneidensis (see paper)
37% identity, 97% coverage: 3:353/361 of query aligns to 4:384/385 of 2pw0A
2pw0B Crystal structure of trans-aconitate bound to methylaconitate isomerase prpf from shewanella oneidensis (see paper)
45% identity, 61% coverage: 3:223/361 of query aligns to 5:228/341 of 2pw0B
Sites not aligning to the query:
>PP_2513 FitnessBrowser__Putida:PP_2513
MGQTRIPCLLMRGGTSKGAYFLHDDLPAPGPLRDRVLLAVMGSPDARQIDGIGGADSLTS
KVAIIRASQRDDADVDYLFAQVVVDEARVDYGQNCGNILAGVGPFALERGLVAASGASTP
VRIFMENTGQIAVAQVPTADGQVEYAGDTRIDGVPGRAAALVVTFADVAGASCGALLPTG
NSRDCVEGVEVTCIDNGMPVVLLCAEDLGVTGYEPCETLEADSALKTRLEAIRLQLGPRM
NLGDVSQRNVPKMCLLSAPRNGGTVNTRSFIPHRCHASIGVFGAVSVATACLIEGSVAQG
LASTSGGDRQRLAVEHPSGEFTVEISLEHGVIKGCGLVRTARLLFDGVVCIGRDTWGGPE
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory