SitesBLAST
Comparing PP_2589 FitnessBrowser__Putida:PP_2589 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
5iuwA Crystal structure of indole-3-acetaldehyde dehydrogenase in complexed with NAD+ and iaa (see paper)
54% identity, 98% coverage: 7:495/497 of query aligns to 7:495/495 of 5iuwA
- active site: N166 (= N166), K189 (= K189), E265 (= E265), C300 (= C300), E399 (= E399), D476 (= D476)
- binding 1h-indol-3-ylacetic acid: F167 (= F167), M170 (≠ D170), C300 (= C300), D457 (= D457), F465 (= F465)
- binding nicotinamide-adenine-dinucleotide: I162 (≠ V162), V163 (= V163), P164 (= P164), W165 (= W165), N166 (= N166), K189 (= K189), G222 (= G222), G226 (= G226), K227 (≠ Q227), F240 (= F240), T241 (= T241), G242 (= G242), S243 (= S243), I246 (≠ V246), Y253 (= Y253), E265 (= E265), A266 (≠ C266), C300 (= C300), E399 (= E399), F401 (= F401)
5iuvA Crystal structure of indole-3-acetaldehyde dehydrogenase in complexed with NAD+ (see paper)
54% identity, 98% coverage: 7:495/497 of query aligns to 7:495/495 of 5iuvA
- active site: N166 (= N166), K189 (= K189), E265 (= E265), C300 (= C300), E399 (= E399), D476 (= D476)
- binding nicotinamide-adenine-dinucleotide: I162 (≠ V162), V163 (= V163), P164 (= P164), W165 (= W165), N166 (= N166), K189 (= K189), S191 (≠ A191), G222 (= G222), G226 (= G226), K227 (≠ Q227), F240 (= F240), T241 (= T241), G242 (= G242), S243 (= S243), I246 (≠ V246), Y253 (= Y253), E265 (= E265), A266 (≠ C266), C300 (= C300), E399 (= E399), F401 (= F401)
7jsoA P. Syringae alda indole-3-acetaldehyde dehydrogenase c302a mutant in complex with NAD+ and iaa (see paper)
54% identity, 98% coverage: 7:495/497 of query aligns to 7:495/495 of 7jsoA
- active site: N166 (= N166), E265 (= E265), A300 (≠ C300), D476 (= D476)
- binding 1h-indol-3-ylacetic acid: F167 (= F167), W174 (= W174), V299 (= V299), A300 (≠ C300), T301 (≠ S301), D457 (= D457), F465 (= F465)
- binding 1,4-dihydronicotinamide adenine dinucleotide: I162 (≠ V162), V163 (= V163), P164 (= P164), W165 (= W165), K189 (= K189), E192 (= E192), G222 (= G222), G226 (= G226), K227 (≠ Q227), F240 (= F240), G242 (= G242), S243 (= S243), I246 (≠ V246), A266 (≠ C266), G267 (= G267), A300 (≠ C300), E399 (= E399), F401 (= F401)
7uyyA The crystal structure of the pseudomonas aeruginosa aldehyde dehydrogenase encoded by the pa4189 gene in complex with nadh (see paper)
48% identity, 99% coverage: 1:492/497 of query aligns to 4:492/496 of 7uyyA
- binding 1,4-dihydronicotinamide adenine dinucleotide: V165 (= V162), L166 (≠ V163), P167 (= P164), W168 (= W165), K192 (= K189), G225 (= G222), G229 (= G226), F243 (= F240), G245 (= G242), S246 (= S243), T249 (≠ V246), L252 (≠ Y249), F253 (= F250), Y256 (= Y253), C269 (= C266), G270 (= G267), C303 (= C300), H350 (≠ Q347), K353 (≠ R350), F400 (= F401)
4pz2B Structure of zm aldh2-6 (rf2f) in complex with NAD (see paper)
48% identity, 96% coverage: 21:496/497 of query aligns to 14:489/494 of 4pz2B
- active site: N159 (= N166), K182 (= K189), E258 (= E265), C292 (= C300), E392 (= E399), D469 (= D476)
- binding nicotinamide-adenine-dinucleotide: I155 (≠ V162), I156 (≠ V163), P157 (= P164), W158 (= W165), N159 (= N166), M164 (= M171), K182 (= K189), A184 (= A191), E185 (= E192), G215 (= G222), G219 (= G226), F233 (= F240), T234 (= T241), G235 (= G242), S236 (= S243), V239 (= V246), E258 (= E265), L259 (≠ C266), C292 (= C300), E392 (= E399), F394 (= F401)
4pxlA Structure of zm aldh2-3 (rf2c) in complex with NAD (see paper)
46% identity, 95% coverage: 21:490/497 of query aligns to 9:475/486 of 4pxlA
- active site: N154 (= N166), K177 (= K189), E253 (= E265), C287 (= C300), E384 (= E399), D461 (= D476)
- binding nicotinamide-adenine-dinucleotide: I150 (≠ V162), V151 (= V163), P152 (= P164), W153 (= W165), K177 (= K189), E180 (= E192), G210 (= G222), G214 (= G226), A215 (≠ Q227), F228 (= F240), G230 (= G242), S231 (= S243), V234 (= V246), E253 (= E265), G255 (= G267), C287 (= C300), Q334 (= Q347), K337 (≠ R350), E384 (= E399), F386 (= F401)
O94788 Retinal dehydrogenase 2; RALDH 2; RalDH2; Aldehyde dehydrogenase family 1 member A2; ALDH1A2; Retinaldehyde-specific dehydrogenase type 2; RALDH(II); EC 1.2.1.36 from Homo sapiens (Human) (see 6 papers)
42% identity, 96% coverage: 21:495/497 of query aligns to 41:513/518 of O94788
- E50 (≠ Q30) to G: in dbSNP:rs34266719
- A110 (= A89) to V: in dbSNP:rs35365164
- Q182 (≠ A161) to K: in DIH4; decreased retinoic acid biosynthetic process
- IPW 184:186 (≠ VPW 163:165) binding
- KPAE 210:213 (= KPAE 189:192) binding
- STE 264:266 (≠ STQ 243:245) binding
- C320 (= C300) active site, Nucleophile
- R347 (≠ W327) to H: in DIH4; decreased expression; dbSNP:rs141245344
- V348 (≠ L328) to I: in dbSNP:rs4646626
- KQYNK 366:370 (≠ GQTGR 346:350) binding
- A383 (= A363) to T: in DIH4; uncertain significance; dbSNP:rs749124508
- E417 (= E399) binding
- E436 (≠ R418) to K: in dbSNP:rs34744827
- S461 (≠ A443) to Y: in DIH4; decreased retinoic acid biosynthetic process
6b5hA Aldh1a2 liganded with NAD and 1-(4-cyanophenyl)-n-(3-fluorophenyl)-3- [4-(methylsulfonyl)phenyl]-1h-pyrazole-4-carboxamide (compound cm121) (see paper)
42% identity, 96% coverage: 21:495/497 of query aligns to 15:487/492 of 6b5hA
- active site: N161 (= N166), E260 (= E265), C294 (= C300), E468 (≠ D476)
- binding 1-(4-cyanophenyl)-N-(3-fluorophenyl)-3-[4-(methylsulfonyl)phenyl]-1H-pyrazole-4-carboxamide: V112 (≠ I117), G116 (= G121), F162 (= F167), W169 (= W174), Q284 (≠ F290), F288 (= F294), T295 (≠ S301), N449 (≠ D457), L451 (= L459), N452 (≠ D460), F457 (= F465)
- binding nicotinamide-adenine-dinucleotide: I157 (≠ V162), I158 (≠ V163), W160 (= W165), N161 (= N166), K184 (= K189), G217 (= G222), G221 (= G226), F235 (= F240), T236 (= T241), G237 (= G242), S238 (= S243), V241 (= V246), E260 (= E265), L261 (≠ C266), C294 (= C300), F393 (= F401)
6b5gA Aldh1a2 liganded with NAD and (3-ethoxythiophen-2-yl){4-[4-nitro-3- (pyrrolidin-1-yl)phenyl]piperazin-1-yl}methanone (compound 6-118) (see paper)
42% identity, 96% coverage: 21:495/497 of query aligns to 15:487/492 of 6b5gA
- active site: N161 (= N166), E260 (= E265), C294 (= C300), E468 (≠ D476)
- binding (3-ethoxythiophen-2-yl){4-[4-nitro-3-(pyrrolidin-1-yl)phenyl]piperazin-1-yl}methanone: F162 (= F167), L165 (≠ D170), W169 (= W174), F288 (= F294), C293 (≠ V299), C294 (= C300), T295 (≠ S301), N449 (≠ D457), L451 (= L459)
- binding nicotinamide-adenine-dinucleotide: I157 (≠ V162), I158 (≠ V163), P159 (= P164), W160 (= W165), N161 (= N166), M166 (= M171), K184 (= K189), E187 (= E192), G217 (= G222), G221 (= G226), F235 (= F240), T236 (= T241), G237 (= G242), S238 (= S243), V241 (= V246), E260 (= E265), L261 (≠ C266), C294 (= C300), E391 (= E399), F393 (= F401)
6aljA Aldh1a2 liganded with NAD and compound win18,446 (see paper)
42% identity, 96% coverage: 21:495/497 of query aligns to 15:487/492 of 6aljA
- active site: N161 (= N166), E260 (= E265), C294 (= C300), E468 (≠ D476)
- binding N,N'-(octane-1,8-diyl)bis(2,2-dichloroacetamide): G116 (= G121), F162 (= F167), L165 (≠ D170), M166 (= M171), W169 (= W174), E260 (= E265), C293 (≠ V299), C294 (= C300), L451 (= L459), N452 (≠ D460), A453 (≠ V461)
- binding nicotinamide-adenine-dinucleotide: I157 (≠ V162), I158 (≠ V163), P159 (= P164), W160 (= W165), N161 (= N166), K184 (= K189), E187 (= E192), G217 (= G222), G221 (= G226), F235 (= F240), G237 (= G242), S238 (= S243), V241 (= V246), Q341 (= Q347), K344 (≠ R350), E391 (= E399), F393 (= F401)
Q56YU0 Aldehyde dehydrogenase family 2 member C4; ALDH1a; Protein REDUCED EPIDERMAL FLUORESCENCE 1; EC 1.2.1.3 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
44% identity, 95% coverage: 21:490/497 of query aligns to 23:490/501 of Q56YU0
- G152 (≠ T150) mutation to E: In ref1-7; reduced activity on sinapaldehyde.
- G416 (≠ A416) mutation to R: In ref1-6; reduced activity on sinapaldehyde.
4fr8A Crystal structure of human aldehyde dehydrogenase-2 in complex with nitroglycerin (see paper)
45% identity, 92% coverage: 34:490/497 of query aligns to 29:483/493 of 4fr8A
- active site: N162 (= N166), K185 (= K189), Q261 (≠ E265), C295 (= C300), E392 (= E399), E469 (≠ D476)
- binding nicotinamide-adenine-dinucleotide: I158 (≠ V162), I159 (≠ V163), W161 (= W165), K185 (= K189), G218 (= G222), G222 (= G226), A223 (≠ Q227), F236 (= F240), G238 (= G242), S239 (= S243), I242 (≠ V246), Q342 (= Q347), K345 (≠ R350), E392 (= E399), F394 (= F401)
- binding propane-1,2,3-triyl trinitrate: F163 (= F167), L166 (≠ D170), W170 (= W174), F289 (= F294), S294 (≠ V299), C295 (= C300), D450 (= D457), F452 (≠ L459)
5l13A Structure of aldh2 in complex with 2p3 (see paper)
45% identity, 92% coverage: 34:490/497 of query aligns to 30:484/494 of 5l13A
- active site: N163 (= N166), K186 (= K189), E262 (= E265), C296 (= C300), E393 (= E399), E470 (≠ D476)
- binding 2,3,5-trimethyl-6-propyl-7H-furo[3,2-g][1]benzopyran-7-one: F164 (= F167), M168 (= M171), W171 (= W174), F290 (= F294), C295 (≠ V299), C296 (= C300), C297 (≠ S301), D451 (= D457), F453 (≠ L459)
4kwgA Crystal structure analysis of aldh2+aldib13 (see paper)
45% identity, 92% coverage: 34:490/497 of query aligns to 30:484/494 of 4kwgA
- active site: N163 (= N166), K186 (= K189), E262 (= E265), C296 (= C300), E393 (= E399), E470 (≠ D476)
- binding 7-bromo-5-methyl-1H-indole-2,3-dione: F164 (= F167), M168 (= M171), C295 (≠ V299), C296 (= C300), C297 (≠ S301), D451 (= D457), F453 (≠ L459)
4kwfA Crystal structure analysis of aldh2+aldib33 (see paper)
45% identity, 92% coverage: 34:490/497 of query aligns to 30:484/494 of 4kwfA
- active site: N163 (= N166), K186 (= K189), E262 (= E265), C296 (= C300), E393 (= E399), E470 (≠ D476)
- binding 1-benzyl-1H-indole-2,3-dione: F164 (= F167), M168 (= M171), W171 (= W174), E262 (= E265), C295 (≠ V299), C296 (= C300), C297 (≠ S301), D451 (= D457), F453 (≠ L459), F459 (= F465)
3sz9A Crystal structure of human aldh2 modified with the beta-elimination product of aldi-3; 1-(4-ethylbenzene)prop-2-en-1-one (see paper)
45% identity, 92% coverage: 34:490/497 of query aligns to 30:484/494 of 3sz9A
- active site: N163 (= N166), K186 (= K189), E262 (= E265), C296 (= C300), E393 (= E399), E470 (≠ D476)
- binding 1-(4-ethylphenyl)propan-1-one: F164 (= F167), C295 (≠ V299), C296 (= C300), D451 (= D457), F453 (≠ L459), F459 (= F465)
3injA Human mitochondrial aldehyde dehydrogenase complexed with agonist alda-1 (see paper)
45% identity, 92% coverage: 34:490/497 of query aligns to 30:484/494 of 3injA
- active site: N163 (= N166), K186 (= K189), E262 (= E265), C296 (= C300), E393 (= E399), E470 (≠ D476)
- binding N-(1,3-benzodioxol-5-ylmethyl)-2,6-dichlorobenzamide: M118 (≠ G121), F164 (= F167), L167 (≠ D170), F286 (= F290), F290 (= F294), D451 (= D457), F453 (≠ L459)
2vleA The structure of daidzin, a naturally occurring anti alcohol- addiction agent, in complex with human mitochondrial aldehyde dehydrogenase (see paper)
45% identity, 92% coverage: 34:490/497 of query aligns to 30:484/494 of 2vleA
- active site: N163 (= N166), K186 (= K189), E262 (= E265), C296 (= C300), E393 (= E399), E470 (≠ D476)
- binding daidzin: M118 (≠ G121), F164 (= F167), M168 (= M171), W171 (= W174), F286 (= F290), F290 (= F294), C295 (≠ V299), C296 (= C300), D451 (= D457), V452 (≠ A458), F453 (≠ L459)
1o01B Human mitochondrial aldehyde dehydrogenase complexed with crotonaldehyde, NAD(h) and mg2+ (see paper)
45% identity, 92% coverage: 34:490/497 of query aligns to 30:484/494 of 1o01B
- active site: N163 (= N166), K186 (= K189), E262 (= E265), C296 (= C300), E393 (= E399), E470 (≠ D476)
- binding (2e)-but-2-enal: C296 (= C300), C297 (≠ S301), F453 (≠ L459)
- binding nicotinamide-adenine-dinucleotide: I159 (≠ V162), I160 (≠ V163), P161 (= P164), W162 (= W165), K186 (= K189), E189 (= E192), G219 (= G222), G223 (= G226), A224 (≠ Q227), F237 (= F240), G239 (= G242), S240 (= S243), I243 (≠ V246), L263 (≠ C266), G264 (= G267), C296 (= C300), Q343 (= Q347), E393 (= E399), F395 (= F401)
1cw3A Human mitochondrial aldehyde dehydrogenase complexed with NAD+ and mn2+ (see paper)
45% identity, 92% coverage: 34:490/497 of query aligns to 30:484/494 of 1cw3A
- active site: N163 (= N166), K186 (= K189), E262 (= E265), C296 (= C300), E393 (= E399), E470 (≠ D476)
- binding magnesium ion: V34 (≠ I38), D103 (≠ N106), Q190 (= Q193)
- binding nicotinamide-adenine-dinucleotide: I159 (≠ V162), I160 (≠ V163), P161 (= P164), W162 (= W165), K186 (= K189), G219 (= G222), G223 (= G226), A224 (≠ Q227), F237 (= F240), G239 (= G242), S240 (= S243), I243 (≠ V246), L263 (≠ C266), G264 (= G267), C296 (= C300), Q343 (= Q347), K346 (≠ R350), E393 (= E399), F395 (= F401)
Query Sequence
>PP_2589 FitnessBrowser__Putida:PP_2589
MYTLEFWQQRASDLYLPAHALIDGKPVNAQDGATFAAINPATNNVLAQVAACGHAEVDLA
VASARRAFEQGPWPRMAPGERKKVLLRLAELIMAHREELALLDSLNMGKPVMDAYNIDVP
GSAHVFAWYGEALDKLYDQVAPTAANALATITREALGVVAAVVPWNFPLDMAAWKLAPAL
AAGNSVVLKPAEQSPFSALRLAQLALEAGVPEGVLNVVPGLGEQAGQALGLHPDVDCLVF
TGSTQVGKYFMQYSAQSNLKQVWLECGGKSPNLVFDNCQDLDLAAEKAAFGIFFNQGEVC
SANSRLYVQRAIHDEFIERLQAKARQWLPGNPLDPASRAGAIVDAGQTGRIEAAIVRAGQ
EGARLVCGGRRLTIEGSDNYIEPTIFAGVEGRMSLAREEVFGPVLAVSAFDTEEEAVRLA
NDSIYGLAASVWSDDFNQVHRVARALKAGTVSVNTVDALDVTVPFGGGKQSGFGRDLSLH
SFDKYSQLKTTWYQLRG
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory