SitesBLAST – Find functional sites

 

SitesBLAST

Comparing PP_2761 PP_2761 putative Ribose ABC transporter, permease protein to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found no hits to proteins with known functional sites (download)

Query Sequence

>PP_2761 PP_2761 putative Ribose ABC transporter, permease protein
MSDSLSAPQPAGLTGLSGRALLRLVMPTLFAAVLLFFALKAPGFLTVGNLSSLLLNNFVL
LAIVAIGMTYAIAAGGIDLSVGTALDFSALTFVLLLNAGFGLYVAIPGGLLAGSLAGLFN
AGLIAGLRISPFLATLGTLFIGSSVQKLLSEGGQPIYLEAQVRSGLATERMLGVPLPLLL
VALLALVYGVVLARGRLGREIIVLGSQPLVARYSGLAQRRIAALVFIASAFASALAGILL
PATVNAYAPMSGNAFLMNAIGAVFIGATLSLHNRVNVPGTLLGVLFLNVTANGLLLIGWN
FFWQQVATGVLILSVLLFSFASRRLGAG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory