SitesBLAST – Find functional sites

 

SitesBLAST

Comparing PP_3134 FitnessBrowser__Putida:PP_3134 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

4isxA The crystal structure of maltose o-acetyltransferase from clostridium difficile 630 in complex with acetyl-coa
38% identity, 50% coverage: 72:186/231 of query aligns to 74:186/186 of 4isxA

query
sites
4isxA
N
 
N
F
 
I
H
 
H
S
 
-
V
 
V
G
 
G
S
 
E
N
 
N
F
 
F
Y
 
F
V
 
A
N
|
N
T
 
Y
G
 
D
C
 
C
K
 
I
F
 
F
L
 
L
D
 
D
P
 
V
S
 
C
L
 
K
V
 
I
R
 
E
I
 
I
G
 
G
N
 
D
S
 
N
V
 
V
G
 
M
L
 
L
S
x
A
D
 
P
C
 
N
T
 
V
L
 
Q
I
 
I
G
 
-
H
 
-
D
 
-
G
 
-
V
 
-
V
 
-
L
 
Y
L
 
T
I
 
A
E
 
Y
H
 
H
R
 
P
F
 
I
G
 
D
K
 
A
H
 
Q
L
 
L
D
 
R
S
 
N
V
 
S
G
 
G
F
 
I
-
 
E
-
 
Y
-
 
G
-
 
S
-
 
P
I
 
V
D
 
K
I
 
I
K
 
G
D
 
D
N
 
N
C
 
V
F
x
W
I
 
I
G
|
G
H
x
G
G
 
G
A
 
V
I
 
I
V
 
I
M
 
T
P
 
P
R
 
G
V
 
I
T
 
T
I
 
I
G
 
G
P
 
D
E
 
N
S
 
V
I
 
V
V
 
I
A
 
G
A
|
A
G
 
G
A
 
S
V
 
V
V
 
V
T
 
T
K
 
K
D
 
D
V
 
I
P
 
P
P
 
P
G
 
N
T
 
T
V
 
V
Y
 
A
G
x
V
G
 
G
N
 
N
P
 
P
A
 
C
E
 
R
F
 
V
I
 
I
C
x
K
T
 
K
T
 
I
E
 
E
Q
 
E

3igjC Crystal structure of maltose o-acetyltransferase complexed with acetyl coenzyme a from bacillus anthracis
41% identity, 50% coverage: 72:186/231 of query aligns to 76:188/188 of 3igjC

query
sites
3igjC
N
 
N
F
 
I
H
 
H
S
 
-
V
 
V
G
 
G
S
 
K
N
 
S
F
 
F
Y
x
F
V
 
A
N
 
N
T
 
F
G
 
N
C
 
C
K
 
V
F
 
I
L
 
L
D
 
D
P
 
V
S
 
C
L
 
E
V
 
V
R
 
R
I
 
I
G
 
G
N
 
D
S
 
H
V
 
C
G
 
M
L
 
F
S
x
A
D
 
P
C
 
G
T
 
V
L
 
H
I
 
I
G
x
Y
H
 
T
D
x
A
G
 
T
V
x
H
V
 
P
L
 
L
L
 
H
-
 
P
I
 
V
E
 
E
H
 
R
R
 
N
F
 
S
G
 
G
K
 
K
H
 
E
L
 
Y
D
 
G
S
 
K
V
 
P
G
 
-
F
 
-
I
 
V
D
 
K
I
 
I
K
 
G
D
 
N
N
 
N
C
 
V
F
 
W
I
 
V
G
|
G
H
 
G
G
 
G
A
 
A
I
 
I
V
 
I
M
x
N
P
 
P
R
 
G
V
 
V
T
 
S
I
 
I
G
 
G
P
 
D
E
 
N
S
 
A
I
 
V
V
 
I
A
|
A
A
x
S
G
 
G
A
 
A
V
 
V
V
 
V
T
|
T
K
 
K
D
 
D
V
 
V
P
 
P
P
 
N
G
 
N
T
 
V
V
 
V
Y
 
V
G
 
G
G
 
G
N
|
N
P
 
P
A
 
A
E
 
K
F
 
V
I
 
I
C
 
K
T
 
T
T
 
I
E
 
E
Q
 
E

5u2kA Crystal structure of galactoside o-acetyltransferase complex with coa (h3 space group)
37% identity, 46% coverage: 76:181/231 of query aligns to 77:181/190 of 5u2kA

query
sites
5u2kA
V
 
L
G
 
G
S
 
K
N
 
N
F
 
V
Y
 
Y
V
 
V
N
 
N
T
 
T
G
 
N
C
 
C
K
 
Y
F
 
F
L
x
M
D
 
D
P
 
G
S
 
G
L
 
Q
V
 
I
R
 
T
I
 
I
G
 
G
N
 
D
S
 
N
V
 
V
G
 
-
L
 
-
S
 
-
D
 
-
C
 
-
T
 
-
L
 
F
I
 
I
G
 
G
H
 
P
D
 
N
G
 
C
V
 
G
V
 
F
L
x
Y
L
 
T
I
x
A
E
 
T
H
|
H
R
 
P
F
 
L
G
 
N
K
 
F
H
 
H
L
 
H
D
 
R
S
 
N
V
 
E
G
 
G
F
 
F
-
 
E
-
 
K
-
 
A
-
 
G
-
 
P
I
 
I
D
 
H
I
 
I
K
 
G
D
 
S
N
 
N
C
 
T
F
 
W
I
 
F
G
 
G
H
 
G
G
 
H
A
 
V
I
 
A
V
 
V
M
x
L
P
 
P
R
 
G
V
 
V
T
 
T
I
 
I
G
 
G
P
 
E
E
 
G
S
 
S
I
 
V
V
 
I
A
 
G
A
 
A
G
 
G
A
 
S
V
 
V
V
 
V
T
|
T
K
|
K
D
 
D
V
 
I
P
 
P
P
 
P
G
 
H
T
 
S
V
 
L
Y
 
A
G
 
V
G
 
G
N
 
N
P
 
P
A
 
C
E
 
K
F
 
V
I
 
V

P07464 Galactoside O-acetyltransferase; GAT; Acetyl-CoA:galactoside 6-O-acetyltransferase; Thiogalactoside acetyltransferase; Thiogalactoside transacetylase; EC 2.3.1.18 from Escherichia coli (strain K12) (see 3 papers)
31% identity, 61% coverage: 61:202/231 of query aligns to 64:196/203 of P07464

query
sites
P07464
L
 
V
E
 
E
W
 
P
G
 
P
A
 
V
Y
 
Y
L
 
F
A
x
S
R
 
Y
W
 
G
G
 
S
N
 
N
F
 
I
H
 
H
S
 
-
V
 
I
G
 
G
S
 
R
N
 
N
F
 
F
Y
 
Y
V
 
A
N
|
N
T
 
F
G
 
N
C
 
L
K
 
T
F
 
I
L
 
V
D
 
D
P
x
D
S
 
Y
L
 
T
V
 
V
R
 
T
I
 
I
G
 
G
N
 
D
S
 
N
V
 
V
G
 
L
L
 
I
S
 
A
-
 
P
-
 
N
-
 
V
D
 
T
C
 
L
T
 
S
L
 
V
I
 
T
G
 
G
H
|
H
D
 
P
G
 
-
V
 
-
V
 
-
L
 
-
L
 
-
I
 
V
E
 
H
H
 
H
R
 
E
F
 
L
G
 
R
K
 
K
H
 
N
L
 
G
D
 
E
S
 
M
V
 
Y
G
 
S
F
 
F
-
 
P
I
 
I
D
 
T
I
 
I
K
 
G
D
 
N
N
 
N
C
 
V
F
 
W
I
 
I
G
 
G
H
x
S
G
 
H
A
 
V
I
 
V
V
 
I
M
 
N
P
 
P
R
 
G
V
 
V
T
 
T
I
 
I
G
 
G
P
 
D
E
 
N
S
 
S
I
 
V
V
 
I
A
 
G
A
|
A
G
 
G
A
 
S
V
 
I
V
 
V
T
|
T
K
|
K
D
 
D
V
 
I
P
 
P
P
 
P
G
 
N
T
 
V
V
 
V
Y
 
A
G
 
A
G
 
G
N
 
V
P
 
P
A
 
C
E
 
-
F
 
-
I
 
-
C
 
-
T
 
-
T
 
-
E
 
-
Q
x
R
L
 
V
I
 
I
K
x
R
R
 
E
V
 
I
E
 
N
A
 
D
R
 
R
C
 
D
E
 
K
A
 
H
Y
 
Y
P
 
Y
W
 
F
I
 
K
D
 
D

Sites not aligning to the query:

1krvA Galactoside acetyltransferase in complex with coa and pnp-beta-gal (see paper)
31% identity, 61% coverage: 61:202/231 of query aligns to 63:195/201 of 1krvA

query
sites
1krvA
L
 
V
E
 
E
W
 
P
G
 
P
A
 
V
Y
 
Y
L
 
F
A
x
S
R
 
Y
W
 
G
G
 
S
N
 
N
F
 
I
H
 
H
S
 
-
V
 
I
G
 
G
S
 
R
N
 
N
F
 
F
Y
|
Y
V
 
A
N
|
N
T
 
F
G
 
N
C
 
L
K
 
T
F
 
I
L
x
V
D
 
D
P
x
D
S
 
Y
L
 
T
V
 
V
R
 
T
I
 
I
G
 
G
N
 
D
S
 
N
V
 
V
G
 
L
L
 
I
S
x
A
-
 
P
-
 
N
-
 
V
D
 
T
C
 
L
T
x
S
L
 
V
I
x
T
G
 
G
H
 
H
D
 
P
G
 
-
V
 
-
V
 
-
L
 
-
L
 
-
I
 
V
E
 
H
H
 
H
R
 
E
F
 
L
G
 
R
K
 
K
H
 
N
L
 
G
D
 
E
S
x
M
V
 
Y
G
 
S
F
 
F
-
 
P
I
 
I
D
 
T
I
 
I
K
 
G
D
 
N
N
 
N
C
 
V
F
x
W
I
 
I
G
|
G
H
x
S
G
 
H
A
 
V
I
 
V
V
 
I
M
x
N
P
 
P
R
 
G
V
 
V
T
 
T
I
 
I
G
 
G
P
 
D
E
 
N
S
 
S
I
 
V
V
 
I
A
 
G
A
|
A
G
 
G
A
 
S
V
 
I
V
 
V
T
 
T
K
 
K
D
 
D
V
 
I
P
 
P
P
 
P
G
 
N
T
 
V
V
 
V
Y
 
A
G
 
A
G
 
G
N
 
V
P
|
P
A
 
C
E
 
-
F
 
-
I
 
-
C
 
-
T
 
-
T
 
-
E
 
-
Q
x
R
L
 
V
I
 
I
K
x
R
R
 
E
V
 
I
E
 
N
A
 
D
R
 
R
C
 
D
E
 
K
A
 
H
Y
 
Y
P
 
Y
W
 
F
I
 
K
D
 
D

Sites not aligning to the query:

1kruA Galactoside acetyltransferase in complex with iptg and coenzyme a (see paper)
31% identity, 61% coverage: 61:202/231 of query aligns to 63:195/201 of 1kruA

query
sites
1kruA
L
 
V
E
 
E
W
 
P
G
 
P
A
 
V
Y
 
Y
L
 
F
A
x
S
R
 
Y
W
 
G
G
 
S
N
 
N
F
 
I
H
 
H
S
 
-
V
 
I
G
 
G
S
 
R
N
 
N
F
 
F
Y
|
Y
V
 
A
N
|
N
T
 
F
G
 
N
C
 
L
K
 
T
F
 
I
L
x
V
D
 
D
P
x
D
S
 
Y
L
 
T
V
 
V
R
 
T
I
 
I
G
 
G
N
 
D
S
 
N
V
 
V
G
x
L
L
 
I
S
 
A
-
 
P
-
 
N
-
 
V
D
 
T
C
 
L
T
 
S
L
 
V
I
 
T
G
 
G
H
|
H
D
 
P
G
 
-
V
 
-
V
 
-
L
 
-
L
 
-
I
 
V
E
 
H
H
 
H
R
 
E
F
 
L
G
 
R
K
 
K
H
 
N
L
 
G
D
 
E
S
x
M
V
 
Y
G
 
S
F
 
F
-
 
P
I
 
I
D
 
T
I
 
I
K
 
G
D
 
N
N
 
N
C
 
V
F
x
W
I
 
I
G
|
G
H
x
S
G
 
H
A
 
V
I
 
V
V
 
I
M
 
N
P
 
P
R
 
G
V
 
V
T
 
T
I
 
I
G
 
G
P
 
D
E
 
N
S
 
S
I
 
V
V
 
I
A
x
G
A
|
A
G
 
G
A
 
S
V
 
I
V
 
V
T
 
T
K
 
K
D
 
D
V
 
I
P
 
P
P
 
P
G
 
N
T
 
V
V
 
V
Y
 
A
G
 
A
G
 
G
N
 
V
P
|
P
A
 
C
E
 
-
F
 
-
I
 
-
C
 
-
T
 
-
T
 
-
E
 
-
Q
 
R
L
 
V
I
 
I
K
x
R
R
 
E
V
 
I
E
 
N
A
 
D
R
 
R
C
 
D
E
 
K
A
 
H
Y
 
Y
P
 
Y
W
 
F
I
 
K
D
 
D

Sites not aligning to the query:

1krrA Galactoside acetyltransferase in complex with acetyl-coenzyme a (see paper)
31% identity, 61% coverage: 61:202/231 of query aligns to 63:195/200 of 1krrA

query
sites
1krrA
L
 
V
E
 
E
W
 
P
G
 
P
A
 
V
Y
 
Y
L
 
F
A
 
S
R
 
Y
W
 
G
G
 
S
N
 
N
F
 
I
H
 
H
S
 
-
V
 
I
G
 
G
S
 
R
N
 
N
F
 
F
Y
 
Y
V
 
A
N
|
N
T
 
F
G
 
N
C
 
L
K
 
T
F
 
I
L
 
V
D
 
D
P
 
D
S
 
Y
L
 
T
V
 
V
R
 
T
I
 
I
G
 
G
N
 
D
S
 
N
V
 
V
G
 
L
L
x
I
S
x
A
-
x
P
-
 
N
-
 
V
D
 
T
C
 
L
T
 
S
L
 
V
I
x
T
G
 
G
H
|
H
D
 
P
G
 
-
V
 
-
V
 
-
L
 
-
L
 
-
I
 
V
E
 
H
H
 
H
R
 
E
F
 
L
G
 
R
K
 
K
H
 
N
L
 
G
D
 
E
S
 
M
V
 
Y
G
 
S
F
 
F
-
 
P
I
 
I
D
 
T
I
 
I
K
 
G
D
 
N
N
 
N
C
 
V
F
 
W
I
 
I
G
|
G
H
x
S
G
 
H
A
 
V
I
 
V
V
 
I
M
x
N
P
 
P
R
 
G
V
 
V
T
 
T
I
 
I
G
 
G
P
 
D
E
 
N
S
 
S
I
 
V
V
 
I
A
x
G
A
|
A
G
 
G
A
 
S
V
 
I
V
 
V
T
 
T
K
 
K
D
 
D
V
 
I
P
 
P
P
 
P
G
 
N
T
 
V
V
 
V
Y
 
A
G
x
A
G
 
G
N
 
V
P
|
P
A
 
C
E
 
-
F
 
-
I
 
-
C
 
-
T
 
-
T
 
-
E
 
-
Q
 
R
L
 
V
I
 
I
K
x
R
R
 
E
V
 
I
E
 
N
A
 
D
R
 
R
C
 
D
E
 
K
A
 
H
Y
 
Y
P
 
Y
W
 
F
I
 
K
D
 
D

3fscA Crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d-glucose n- acetyl transferase from thermoanaerobacterium thermosaccharolyticum in complex with coa and dtdp-3-amino-fucose (see paper)
43% identity, 25% coverage: 143:200/231 of query aligns to 181:237/259 of 3fscA

query
sites
3fscA
A
 
S
I
 
V
V
 
V
M
 
L
P
 
P
R
 
G
V
 
I
T
 
H
I
 
I
G
 
N
P
 
E
E
 
D
S
 
A
I
 
L
V
 
V
A
x
G
A
|
A
G
 
G
A
 
A
V
 
V
V
 
V
T
 
T
K
 
K
D
 
D
V
 
V
P
 
P
P
 
K
G
 
E
T
 
T
V
 
V
Y
 
V
G
x
V
G
 
G
N
 
N
P
 
P
A
 
A
E
 
R
F
 
E
I
 
I
C
 
C
T
 
S
T
 
I
E
 
R
Q
 
K
L
 
I
I
 
K
K
 
N
R
x
K
V
 
I
E
 
T
A
 
G
R
 
E
C
 
-
E
 
Q
A
 
V
Y
 
Y
P
 
P
W
 
W

Sites not aligning to the query:

3fs8A Crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d-glucose n- acetyl transferase from thermoanaerobacterium thermosaccharolyticum in complex with acetyl-coa (see paper)
43% identity, 25% coverage: 143:200/231 of query aligns to 181:237/259 of 3fs8A

query
sites
3fs8A
A
 
S
I
 
V
V
 
V
M
 
L
P
 
P
R
 
G
V
 
I
T
 
H
I
 
I
G
 
N
P
 
E
E
 
D
S
 
A
I
 
L
V
 
V
A
x
G
A
|
A
G
 
G
A
 
A
V
 
V
V
 
V
T
 
T
K
 
K
D
 
D
V
 
V
P
 
P
P
 
K
G
 
E
T
 
T
V
 
V
Y
 
V
G
x
V
G
 
G
N
 
N
P
 
P
A
 
A
E
 
R
F
 
E
I
 
I
C
 
C
T
 
S
T
 
I
E
 
R
Q
 
K
L
 
I
I
 
K
K
 
N
R
x
K
V
 
I
E
 
T
A
 
G
R
 
E
C
 
-
E
 
Q
A
 
V
Y
 
Y
P
 
P
W
 
W

Sites not aligning to the query:

3fsbA Crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d-glucose n- acetyl transferase from thermoanaerobacterium thermosaccharolyticum in complex with coa and dtdp-3-amino-quinovose (see paper)
43% identity, 25% coverage: 143:200/231 of query aligns to 181:237/260 of 3fsbA

query
sites
3fsbA
A
 
S
I
 
V
V
 
V
M
 
L
P
 
P
R
 
G
V
 
I
T
 
H
I
 
I
G
 
N
P
 
E
E
 
D
S
 
A
I
 
L
V
 
V
A
x
G
A
|
A
G
 
G
A
 
A
V
 
V
V
 
V
T
 
T
K
 
K
D
 
D
V
 
V
P
 
P
P
 
K
G
 
E
T
 
T
V
 
V
Y
 
V
G
x
V
G
 
G
N
 
N
P
 
P
A
 
A
E
 
R
F
 
E
I
 
I
C
 
C
T
 
S
T
 
I
E
 
R
Q
 
K
L
 
I
I
 
K
K
 
N
R
 
K
V
 
I
E
 
T
A
 
G
R
 
E
C
 
-
E
 
Q
A
 
V
Y
 
Y
P
 
P
W
 
W

Sites not aligning to the query:

4hurA Crystal structure of streptogramin group a antibiotic acetyltransferase vata from staphylococcus aureus in complex with acetyl coenzyme a (see paper)
47% identity, 26% coverage: 123:181/231 of query aligns to 105:163/211 of 4hurA

query
sites
4hurA
K
 
K
H
 
D
L
 
L
D
 
P
S
 
L
V
x
K
G
 
G
F
 
D
I
 
I
D
 
E
I
 
I
K
 
G
D
 
N
N
 
D
C
 
V
F
x
W
I
|
I
G
|
G
H
x
R
G
 
D
A
 
V
I
 
T
V
 
I
M
|
M
P
 
P
R
 
G
V
 
V
T
 
K
I
 
I
G
 
G
P
 
D
E
 
G
S
 
A
I
 
I
V
 
I
A
|
A
A
|
A
G
 
E
A
 
A
V
 
V
V
 
V
T
|
T
K
 
K
D
 
N
V
 
V
P
 
A
P
 
P
G
 
Y
T
 
S
V
 
I
Y
 
V
G
|
G
G
 
G
N
 
N
P
|
P
A
 
L
E
 
K
F
 
F
I
|
I

Sites not aligning to the query:

6x3cA Crystal structure of streptogramin a acetyltransferase vata from staphylococcus aureus in complex with streptogramin analog f1037 (47) (see paper)
47% identity, 26% coverage: 123:181/231 of query aligns to 105:163/207 of 6x3cA

query
sites
6x3cA
K
 
K
H
 
D
L
 
L
D
 
P
S
 
L
V
 
K
G
 
G
F
 
D
I
 
I
D
 
E
I
 
I
K
 
G
D
 
N
N
 
D
C
 
V
F
x
W
I
 
I
G
|
G
H
x
R
G
 
D
A
 
V
I
 
T
V
 
I
M
|
M
P
 
P
R
 
G
V
 
V
T
 
K
I
 
I
G
 
G
P
 
D
E
 
G
S
 
A
I
 
I
V
 
I
A
|
A
A
|
A
G
 
E
A
 
A
V
 
V
V
 
V
T
 
T
K
 
K
D
 
N
V
 
V
P
 
A
P
 
P
G
 
Y
T
 
S
V
 
I
Y
 
V
G
 
G
G
 
G
N
 
N
P
 
P
A
 
L
E
 
K
F
 
F
I
 
I

Sites not aligning to the query:

4husA Crystal structure of streptogramin group a antibiotic acetyltransferase vata from staphylococcus aureus in complex with virginiamycin m1 (see paper)
47% identity, 26% coverage: 123:181/231 of query aligns to 105:163/212 of 4husA

query
sites
4husA
K
 
K
H
 
D
L
 
L
D
 
P
S
 
L
V
 
K
G
 
G
F
 
D
I
 
I
D
 
E
I
 
I
K
 
G
D
 
N
N
 
D
C
 
V
F
 
W
I
 
I
G
 
G
H
 
R
G
 
D
A
 
V
I
 
T
V
 
I
M
 
M
P
 
P
R
 
G
V
 
V
T
 
K
I
 
I
G
 
G
P
 
D
E
 
G
S
 
A
I
 
I
V
 
I
A
 
A
A
 
A
G
 
E
A
 
A
V
 
V
V
 
V
T
 
T
K
 
K
D
 
N
V
 
V
P
 
A
P
 
P
G
 
Y
T
 
S
V
 
I
Y
 
V
G
 
G
G
 
G
N
 
N
P
 
P
A
 
L
E
 
K
F
 
F
I
 
I

Sites not aligning to the query:

6x3jA Crystal structure of streptogramin a acetyltransferase vata from staphylococcus aureus in complex with streptogramin analog f0224 (46) (see paper)
47% identity, 26% coverage: 123:181/231 of query aligns to 105:163/206 of 6x3jA

query
sites
6x3jA
K
 
K
H
 
D
L
|
L
D
 
P
S
 
L
V
 
K
G
 
G
F
 
D
I
 
I
D
 
E
I
 
I
K
 
G
D
 
N
N
 
D
C
 
V
F
x
W
I
 
I
G
|
G
H
 
R
G
 
D
A
 
V
I
 
T
V
 
I
M
 
M
P
 
P
R
 
G
V
 
V
T
 
K
I
 
I
G
 
G
P
 
D
E
 
G
S
 
A
I
 
I
V
 
I
A
 
A
A
 
A
G
 
E
A
 
A
V
 
V
V
 
V
T
 
T
K
 
K
D
 
N
V
 
V
P
 
A
P
 
P
G
 
Y
T
 
S
V
 
I
Y
 
V
G
 
G
G
 
G
N
 
N
P
 
P
A
 
L
E
 
K
F
 
F
I
 
I

Sites not aligning to the query:

3nz2J Crystal structure of hexapeptide-repeat containing-acetyltransferase vca0836 complexed with acetyl co enzyme a from vibrio cholerae o1 biovar eltor
30% identity, 50% coverage: 66:181/231 of query aligns to 67:181/185 of 3nz2J

query
sites
3nz2J
Y
 
F
L
 
H
A
 
C
R
 
E
W
 
F
G
 
G
N
 
K
F
 
T
H
 
I
S
 
R
V
 
I
G
 
G
S
 
D
N
 
H
F
 
T
Y
 
F
V
 
I
N
 
N
T
 
M
G
 
N
C
 
V
K
 
V
F
 
M
L
 
L
D
 
D
P
 
G
S
 
A
L
 
P
V
 
I
R
 
T
I
 
I
G
 
G
N
 
D
S
 
H
V
 
V
G
 
L
L
 
I
S
x
G
D
 
P
C
 
S
T
 
T
L
 
Q
I
 
F
G
x
Y
H
 
T
D
 
A
G
 
S
V
x
H
V
 
S
L
 
L
L
 
-
I
 
-
E
 
D
H
 
Y
R
 
R
F
 
R
G
 
R
K
 
Q
H
 
A
L
 
W
D
 
E
S
 
T
V
 
I
-
 
C
G
 
K
F
 
P
I
 
I
D
 
V
I
 
I
K
 
E
D
 
D
N
 
D
C
 
V
F
x
W
I
 
I
G
|
G
H
 
G
G
 
N
A
 
V
I
 
V
V
 
I
M
 
N
P
 
Q
R
 
G
V
 
V
T
 
T
I
 
I
G
 
G
P
 
A
E
 
R
S
 
S
I
 
V
V
 
V
A
|
A
A
|
A
G
 
N
A
 
S
V
 
V
V
 
V
T
x
N
K
 
Q
D
 
D
V
 
V
P
 
P
P
 
P
G
 
D
T
 
T
V
 
L
Y
 
V
G
|
G
G
 
G
N
x
T
P
|
P
A
 
A
E
 
R
F
 
I
I
 
L

Sites not aligning to the query:

3ectA Crystal structure of the hexapeptide-repeat containing- acetyltransferase vca0836 from vibrio cholerae
30% identity, 50% coverage: 66:181/231 of query aligns to 57:171/176 of 3ectA

query
sites
3ectA
Y
 
F
L
 
H
A
 
C
R
 
E
W
 
F
G
 
G
N
 
K
F
 
T
H
 
I
S
 
R
V
 
I
G
 
G
S
 
D
N
 
H
F
 
T
Y
 
F
V
 
I
N
 
N
T
 
M
G
 
N
C
 
V
K
 
V
F
 
M
L
 
L
D
 
D
P
 
G
S
 
A
L
 
P
V
 
I
R
 
T
I
 
I
G
 
G
N
 
D
S
 
H
V
 
V
G
 
L
L
 
I
S
 
G
D
 
P
C
 
S
T
 
T
L
 
Q
I
 
F
G
 
Y
H
 
T
D
 
A
G
 
S
V
 
H
V
 
S
L
 
L
L
 
-
I
 
-
E
 
D
H
 
Y
R
 
R
F
 
R
G
 
R
K
 
Q
H
 
A
L
 
W
D
 
E
S
 
T
V
 
I
-
 
C
G
 
K
F
 
P
I
 
I
D
 
V
I
 
I
K
 
E
D
 
D
N
 
D
C
 
V
F
 
W
I
 
I
G
 
G
H
 
G
G
 
N
A
 
V
I
 
V
V
 
I
M
 
N
P
 
Q
R
x
G
V
 
V
T
 
T
I
 
I
G
 
G
P
 
A
E
 
R
S
 
S
I
 
V
V
 
V
A
 
A
A
 
A
G
 
N
A
 
S
V
 
V
V
 
V
T
 
N
K
 
Q
D
|
D
V
 
V
P
 
P
P
 
P
G
 
D
T
 
T
V
 
L
Y
 
V
G
 
G
G
 
G
N
 
T
P
 
P
A
 
A
E
 
R
F
 
I
I
 
L

6x3cE Crystal structure of streptogramin a acetyltransferase vata from staphylococcus aureus in complex with streptogramin analog f1037 (47) (see paper)
47% identity, 26% coverage: 123:181/231 of query aligns to 105:163/203 of 6x3cE

query
sites
6x3cE
K
 
K
H
 
D
L
 
L
D
 
P
S
 
L
V
 
K
G
 
G
F
 
D
I
 
I
D
 
E
I
 
I
K
 
G
D
 
N
N
 
D
C
 
V
F
x
W
I
 
I
G
|
G
H
 
R
G
 
D
A
 
V
I
 
T
V
 
I
M
 
M
P
 
P
R
 
G
V
 
V
T
 
K
I
 
I
G
 
G
P
 
D
E
 
G
S
 
A
I
 
I
V
 
I
A
|
A
A
|
A
G
 
E
A
 
A
V
 
V
V
 
V
T
 
T
K
 
K
D
 
N
V
 
V
P
 
A
P
 
P
G
 
Y
T
 
S
V
 
I
Y
 
V
G
 
G
G
 
G
N
|
N
P
|
P
A
 
L
E
 
K
F
 
F
I
 
I

Sites not aligning to the query:

3nz2C Crystal structure of hexapeptide-repeat containing-acetyltransferase vca0836 complexed with acetyl co enzyme a from vibrio cholerae o1 biovar eltor
30% identity, 50% coverage: 66:181/231 of query aligns to 64:178/183 of 3nz2C

query
sites
3nz2C
Y
 
F
L
 
H
A
 
C
R
 
E
W
 
F
G
 
G
N
 
K
F
 
T
H
 
I
S
 
R
V
 
I
G
 
G
S
 
D
N
 
H
F
 
T
Y
 
F
V
 
I
N
 
N
T
 
M
G
 
N
C
 
V
K
 
V
F
 
M
L
 
L
D
 
D
P
 
G
S
 
A
L
 
P
V
 
I
R
 
T
I
 
I
G
 
G
N
 
D
S
 
H
V
 
V
G
 
L
L
 
I
S
 
G
D
 
P
C
 
S
T
 
T
L
 
Q
I
 
F
G
x
Y
H
 
T
D
 
A
G
 
S
V
x
H
V
 
S
L
 
L
L
 
-
I
 
-
E
 
D
H
 
Y
R
 
R
F
 
R
G
 
R
K
 
Q
H
 
A
L
 
W
D
 
E
S
 
T
V
 
I
-
 
C
G
 
K
F
 
P
I
 
I
D
 
V
I
 
I
K
 
E
D
 
D
N
 
D
C
 
V
F
 
W
I
 
I
G
|
G
H
 
G
G
 
N
A
 
V
I
 
V
V
 
I
M
 
N
P
 
Q
R
 
G
V
 
V
T
 
T
I
 
I
G
 
G
P
 
A
E
 
R
S
 
S
I
 
V
V
 
V
A
|
A
A
|
A
G
x
N
A
 
S
V
 
V
V
 
V
T
x
N
K
 
Q
D
 
D
V
 
V
P
 
P
P
 
P
G
 
D
T
 
T
V
 
L
Y
 
V
G
|
G
G
 
G
N
x
T
P
|
P
A
 
A
E
 
R
F
 
I
I
x
L

Sites not aligning to the query:

8bpxy Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (see paper)
31% identity, 48% coverage: 78:188/231 of query aligns to 90:198/265 of 8bpxy

query
sites
8bpxy
S
 
N
N
 
N
F
 
I
Y
 
S
V
 
V
N
 
G
T
 
S
G
 
G
C
 
T
K
 
N
F
 
I
L
 
Q
D
 
D
P
 
N
S
 
T
L
 
L
V
 
V
R
x
H
I
 
V
G
 
A
-
 
K
-
 
T
N
 
N
S
 
I
V
 
S
G
 
G
L
 
K
S
 
V
D
 
L
C
 
P
T
 
T
L
 
L
I
 
I
G
 
G
H
 
D
D
 
N
G
 
V
V
 
T
V
 
V
L
 
-
L
 
-
I
 
-
E
 
-
H
 
-
R
 
-
F
 
-
G
 
-
K
 
G
H
 
H
L
 
S
D
 
A
S
 
V
V
 
I
G
x
H
F
 
G
I
 
C
D
 
T
I
 
V
K
 
E
D
 
D
N
 
D
C
 
A
F
|
F
I
 
V
G
|
G
H
x
M
G
 
G
A
 
A
I
 
T
V
 
L
M
 
L
P
 
D
R
 
G
V
 
V
T
 
V
I
 
V
G
 
E
P
 
K
E
 
H
S
 
A
I
 
M
V
 
V
A
|
A
A
|
A
G
 
G
A
 
S
V
 
L
V
 
V
T
 
K
K
 
Q
D
 
N
-
 
T
-
 
R
V
 
I
P
 
P
P
 
S
G
 
G
T
 
E
V
 
V
Y
 
W
G
 
G
G
 
G
N
 
N
P
 
P
A
 
A
E
 
K
F
 
F
I
x
M
-
x
R
-
 
K
C
 
L
T
 
T
T
 
D
E
 
E
Q
 
E
L
 
I
I
 
V

Sites not aligning to the query:

8befy Cryo-em structure of the arabidopsis thaliana i+iii2 supercomplex (ci membrane core) (see paper)
31% identity, 48% coverage: 78:188/231 of query aligns to 90:198/265 of 8befy

query
sites
8befy
S
 
N
N
 
N
F
 
I
Y
 
S
V
 
V
N
 
G
T
 
S
G
 
G
C
 
T
K
 
N
F
 
I
L
 
Q
D
 
D
P
 
N
S
 
T
L
 
L
V
 
V
R
x
H
I
 
V
G
 
A
-
 
K
-
 
T
N
 
N
S
 
I
V
 
S
G
 
G
L
 
K
S
 
V
D
 
L
C
 
P
T
 
T
L
 
L
I
 
I
G
 
G
H
 
D
D
 
N
G
 
V
V
 
T
V
 
V
L
 
-
L
 
-
I
 
-
E
 
-
H
 
-
R
 
-
F
 
-
G
 
-
K
 
G
H
 
H
L
 
S
D
 
A
S
 
V
V
 
I
G
x
H
F
 
G
I
 
C
D
 
T
I
 
V
K
 
E
D
 
D
N
 
D
C
 
A
F
|
F
I
 
V
G
|
G
H
x
M
G
 
G
A
 
A
I
 
T
V
 
L
M
 
L
P
 
D
R
 
G
V
 
V
T
 
V
I
 
V
G
 
E
P
 
K
E
 
H
S
 
A
I
 
M
V
 
V
A
|
A
A
|
A
G
 
G
A
 
S
V
 
L
V
 
V
T
 
K
K
 
Q
D
 
N
-
 
T
-
 
R
V
 
I
P
 
P
P
 
S
G
 
G
T
 
E
V
 
V
Y
 
W
G
 
G
G
 
G
N
 
N
P
 
P
A
 
A
E
 
K
F
 
F
I
 
M
-
x
R
-
 
K
C
 
L
T
 
T
T
 
D
E
 
E
Q
 
E
L
 
I
I
 
V

Sites not aligning to the query:

Query Sequence

>PP_3134 FitnessBrowser__Putida:PP_3134
MSAMRSAPRRTRPERLRRLQIVQIARPGSMKGWIRKAVARYAHATGRGGKFYRRFCNPSG
LEWGAYLARWGNFHSVGSNFYVNTGCKFLDPSLVRIGNSVGLSDCTLIGHDGVVLLIEHR
FGKHLDSVGFIDIKDNCFIGHGAIVMPRVTIGPESIVAAGAVVTKDVPPGTVYGGNPAEF
ICTTEQLIKRVEARCEAYPWIDLVKQRNGAYDPEVEPLLMAQRRQYFFGDS

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory