Comparing PP_3416 FitnessBrowser__Putida:PP_3416 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 3 hits to proteins with known functional sites (download)
1kofA Crystal structure of gluconate kinase (see paper)
37% identity, 89% coverage: 2:160/179 of query aligns to 3:162/171 of 1kofA
1ko8A Crystal structure of gluconate kinase (see paper)
37% identity, 89% coverage: 2:160/179 of query aligns to 3:162/172 of 1ko8A
1ko5A Crystal structure of gluconate kinase (see paper)
37% identity, 89% coverage: 2:160/179 of query aligns to 3:162/172 of 1ko5A
>PP_3416 FitnessBrowser__Putida:PP_3416
MNSPLSAIVVMGVAGCGKSCIGAAIAARSGGRLIEGDAFHPAENIRKMSAGIPLDDSDRA
GWLVRLGEELQATTQAGERPILTCSALKRRYRDTLRDAMPGLVFVFLELSPAEAEKRVLA
RPGHFMPASLIDSQFAALESPRGEPLTLALDATQPIEALAEAVDHWLKHCGEPGLAQTA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory