Comparing PP_3558 FitnessBrowser__Putida:PP_3558 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 6 hits to proteins with known functional sites (download)
7yleA Rndmpx in complex with dmsp (see paper)
27% identity, 86% coverage: 37:326/338 of query aligns to 10:286/299 of 7yleA
Q5LT66 Trimethylamine N-oxide-binding protein; TMAO-binding protein from Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) (Silicibacter pomeroyi) (see paper)
24% identity, 96% coverage: 1:326/338 of query aligns to 21:331/333 of Q5LT66
Sites not aligning to the query:
Q4FL33 Trimethylamine N-oxide-binding protein; TMAO-binding protein from Pelagibacter ubique (strain HTCC1062) (see paper)
23% identity, 95% coverage: 1:322/338 of query aligns to 1:309/314 of Q4FL33
4xz6A Tmox in complex with tmao (see paper)
24% identity, 88% coverage: 31:326/338 of query aligns to 9:289/291 of 4xz6A
P0AFM2 Glycine betaine/proline betaine-binding periplasmic protein; GBBP from Escherichia coli (strain K12) (see 2 papers)
27% identity, 45% coverage: 154:304/338 of query aligns to 145:297/330 of P0AFM2
Sites not aligning to the query:
1r9qA Structure analysis of prox in complex with proline betaine (see paper)
27% identity, 45% coverage: 154:304/338 of query aligns to 124:276/309 of 1r9qA
Sites not aligning to the query:
>PP_3558 FitnessBrowser__Putida:PP_3558
MKSISTLLAGLLLTVGLASTDSAASAEQPAPIHFGAIGWESGALTTEILRLIVERGYGYR
TDTLPGSTVSMEVALARNDLQVIAEEWAGRSPAWVKAEQAGQVFALGDTVKNAEEGWWVP
AYVIEGDAARNLKPVAPELHSVEDLKRYPQVFSDPESPGKGRFLNSPSGWTSETVNSQKL
KAYGLDGLYNNFRSGSGAAMDAEIGSAIRRGKPVLFYYWNPTPLMGRYKLIRLEEPPFDA
QAWATLTDPANPNPKGSRSLPAKLSIGVSKAFRENYPDLVSVFEQVDLPIDRLNKALAVM
SEKRTPPREAALTFLRDNREVWKAWLPADIAAKVEASL
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory