SitesBLAST – Find functional sites

 

SitesBLAST

Comparing PP_3594 FitnessBrowser__Putida:PP_3594 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
29% identity, 88% coverage: 20:229/239 of query aligns to 16:213/215 of 4ymtC

query
sites
4ymtC
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M
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I
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A
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P
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I
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K
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L
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A
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S
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Y
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I
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E
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V
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I
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R
G
 
G
L
 
T
P
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P
E
x
L
L
 
L
L
 
V
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Q
L
 
L
L
 
L
I
 
L
I
 
I
Y
 
Y
Y
 
N
G
 
G
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L
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M
I
 
-
A
 
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-
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-
K
 
-
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-
A
 
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M
 
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G
 
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Y
 
-
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Q
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F
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M
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N
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N
 
P
T
 
A
F
 
F
L
 
T
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A
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G
M
 
V
I
 
S
A
 
A
F
 
L
S
 
A
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I
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x
N
F
 
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S
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A
F
x
Y
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V
S
 
A
E
 
E
I
 
I
W
 
I
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R
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A
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G
F
 
I
K
 
Q
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A
L
 
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D
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G
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Q
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N
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E
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A
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A
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S
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L
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G
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M
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L
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M
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D
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A
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I
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V
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I
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D
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R
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Q
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A
N
 
D
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Y
G
 
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A
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A
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I
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Y
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R
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R

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
29% identity, 88% coverage: 20:229/239 of query aligns to 16:213/214 of 4ymwC

query
sites
4ymwC
L
 
I
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A
 
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L
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F
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A
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M
 
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Y
G
 
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I
C
 
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R

Query Sequence

>PP_3594 FitnessBrowser__Putida:PP_3594
MLDQLSLLSFASGGWGQALLAGALVTVSLALACLPIGLPLGLVVALAARSRKRLPRAWAT
TFSTVFRGLPELLTLLIIYYGCQIAAQKILAAMGYQGEFLINTFLAAMIAFSLVFAAFSS
EIWLAAFKTLPKGQLEACSALGLSKRTGFFKVLLPQLTRIALPGLSNNWLSLLKDTSLVS
TISLVDLMRQTNLAVSVTKEPMFFYGVACLGYLLFAALSGRVFAYIERRSNRHLQGARA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory