SitesBLAST – Find functional sites

 

SitesBLAST

Comparing PP_3595 PP_3595 Amino acid ABC transporter, membrane protein to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

4ymtC Crystal structure of an amino acid abc transporter complex with arginines (see paper)
35% identity, 94% coverage: 9:231/236 of query aligns to 1:214/215 of 4ymtC

query
sites
4ymtC
M
 
M
V
 
T
L
 
V
D
 
D
P
 
F
D
 
L
L
 
S
L
 
M
E
 
V
R
 
K
Y
 
Y
G
 
T
P
 
P
R
 
L
F
 
F
I
 
I
D
 
S
G
 
G
L
 
L
L
 
I
V
 
M
T
 
T
A
 
L
K
 
K
L
 
L
V
 
T
A
 
F
I
 
L
S
 
A
F
 
V
S
 
T
L
 
I
G
 
G
A
 
V
V
 
L
L
 
M
G
 
G
L
 
L
L
 
F
L
 
I
A
 
A
L
 
L
A
 
M
R
 
K
L
 
M
S
 
S
R
 
S
S
 
I
L
 
K
V
 
P
L
 
I
Q
 
K
R
 
L
M
 
V
A
 
A
A
 
S
G
 
S
Y
 
Y
V
 
I
Y
 
E
F
 
V
F
 
I
R
 
R
G
 
G
S
 
T
P
|
P
L
|
L
L
 
L
A
 
V
Q
 
Q
L
 
L
F
 
L
L
 
L
L
 
I
Y
 
Y
Y
 
N
G
 
G
L
 
L
G
 
M
S
 
Q
L
 
-
K
 
-
G
 
-
F
 
F
W
 
G
Q
 
M
D
 
N
V
 
I
G
 
-
L
 
-
W
 
-
W
 
-
F
 
-
F
 
-
R
 
-
D
 
P
A
 
A
W
 
F
F
 
T
C
 
A
T
 
G
L
 
V
L
 
S
A
 
A
F
 
L
T
 
A
L
 
I
N
|
N
T
 
S
A
 
S
A
 
A
Y
|
Y
Q
 
V
A
 
A
E
 
E
I
 
I
F
 
I
R
 
R
G
 
A
S
 
G
L
 
I
M
 
Q
A
 
A
V
 
V
A
 
D
P
 
P
G
 
G
Q
 
Q
H
 
N
E
 
E
A
 
A
A
 
A
R
 
R
A
 
S
L
 
L
N
 
G
L
 
M
K
 
T
R
 
H
S
 
A
T
 
M
T
 
A
F
 
M
F
 
R
K
 
Y
V
 
V
I
 
I
L
 
I
P
 
P
Q
 
Q
S
 
A
L
 
I
L
 
K
V
 
N
A
 
I
I
 
L
G
 
P
P
 
A
L
 
L
G
 
G
N
 
N
E
|
E
L
 
F
I
 
I
L
 
V
M
|
M
I
 
L
K
|
K
A
x
E
S
 
S
A
 
A
I
 
I
A
 
V
S
 
S
L
 
V
V
 
I
T
 
G
I
 
F
Y
 
A
D
 
D
L
 
L
M
 
T
G
 
R
V
 
Q
T
 
A
K
 
D
L
 
I
A
 
I
F
 
Q
S
 
S
R
 
V
S
 
T
F
 
Y
D
 
R
-
 
Y
F
 
F
Q
 
E
I
 
P
Y
 
Y
L
 
I
W
 
I
A
 
I
A
 
A
V
 
A
L
 
I
Y
 
Y
L
 
F
V
 
V
I
 
M
V
 
T
E
 
L
L
 
T
V
 
F
R
 
S
R
 
K
L
 
L
L
 
L
K
 
S
H
 
L
L
 
F
E
 
E
A
 
R
R
 
R
L
 
L

4ymwC Crystal structure of an amino acid abc transporter with histidines (see paper)
35% identity, 94% coverage: 9:231/236 of query aligns to 1:214/214 of 4ymwC

query
sites
4ymwC
M
 
M
V
 
T
L
 
V
D
 
D
P
 
F
D
 
L
L
 
S
L
 
M
E
 
V
R
 
K
Y
 
Y
G
 
T
P
 
P
R
 
L
F
 
F
I
 
I
D
 
S
G
 
G
L
 
L
L
 
I
V
 
M
T
 
T
A
 
L
K
 
K
L
 
L
V
 
T
A
 
F
I
 
L
S
 
A
F
 
V
S
 
T
L
 
I
G
 
G
A
 
V
V
 
L
L
 
M
G
 
G
L
 
L
L
 
F
L
 
I
A
 
A
L
 
L
A
 
M
R
 
K
L
 
M
S
 
S
R
 
S
S
 
I
L
 
K
V
 
P
L
 
I
Q
 
K
R
 
L
M
 
V
A
 
A
A
 
S
G
 
S
Y
 
Y
V
 
I
Y
 
E
F
 
V
F
 
I
R
 
R
G
 
G
S
 
T
P
 
P
L
 
L
L
 
L
A
 
V
Q
 
Q
L
 
L
F
 
L
L
 
L
L
 
I
Y
 
Y
Y
 
N
G
 
G
L
 
L
G
 
-
S
 
-
L
 
-
K
 
M
G
 
Q
F
 
F
W
 
G
Q
 
M
D
 
N
V
 
I
G
 
-
L
 
-
W
 
-
W
 
-
F
 
-
F
 
-
R
 
-
D
 
P
A
 
A
W
 
F
F
 
T
C
 
A
T
 
G
L
 
V
L
 
S
A
 
A
F
 
L
T
 
A
L
 
I
N
|
N
T
 
S
A
 
S
A
 
A
Y
|
Y
Q
 
V
A
 
A
E
 
E
I
 
I
F
 
I
R
 
R
G
 
A
S
 
G
L
 
I
M
 
Q
A
 
A
V
 
V
A
 
D
P
 
P
G
 
G
Q
 
Q
H
 
N
E
 
E
A
 
A
A
 
A
R
 
R
A
 
S
L
 
L
N
 
G
L
 
M
K
 
T
R
 
H
S
 
A
T
 
M
T
 
A
F
 
M
F
 
R
K
 
Y
V
 
V
I
 
I
L
 
I
P
 
P
Q
 
Q
S
 
A
L
 
I
L
 
K
V
 
N
A
 
I
I
 
L
G
 
P
P
 
A
L
 
L
G
 
G
N
 
N
E
|
E
L
 
F
I
 
I
L
 
V
M
 
M
I
 
L
K
 
K
A
x
E
S
 
S
A
 
A
I
 
I
A
 
V
S
 
S
L
 
V
V
 
I
T
 
G
I
 
F
Y
 
A
D
 
D
L
 
L
M
 
T
G
 
R
V
 
Q
T
 
A
K
 
D
L
 
I
A
 
I
F
 
Q
S
 
S
R
 
V
S
 
T
F
 
Y
D
 
R
-
 
Y
F
 
F
Q
 
E
I
 
P
Y
 
Y
L
 
I
W
 
I
A
 
I
A
 
A
V
 
A
L
 
I
Y
 
Y
L
 
F
V
 
V
I
 
M
V
 
T
E
 
L
L
 
T
V
 
F
R
 
S
R
 
K
L
 
L
L
 
L
K
 
S
H
 
L
L
 
F
E
 
E
A
 
R
R
 
R
L
 
L

Query Sequence

>PP_3595 PP_3595 Amino acid ABC transporter, membrane protein
MSFDQLLAMVLDPDLLERYGPRFIDGLLVTAKLVAISFSLGAVLGLLLALARLSRSLVLQ
RMAAGYVYFFRGSPLLAQLFLLYYGLGSLKGFWQDVGLWWFFRDAWFCTLLAFTLNTAAY
QAEIFRGSLMAVAPGQHEAARALNLKRSTTFFKVILPQSLLVAIGPLGNELILMIKASAI
ASLVTIYDLMGVTKLAFSRSFDFQIYLWAAVLYLVIVELVRRLLKHLEARLGRHLN

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory