Comparing PP_4041 FitnessBrowser__Putida:PP_4041 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
Q978S7 Trehalase; Alpha,alpha-trehalase; EC 3.2.1.28 from Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) (see paper)
33% identity, 98% coverage: 4:587/598 of query aligns to 29:613/623 of Q978S7
Q4J7W0 Trehalase 1; Alpha,alpha-trehalase; SaTreH1; EC 3.2.1.28 from Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (see paper)
31% identity, 94% coverage: 9:572/598 of query aligns to 8:541/558 of Q4J7W0
>PP_4041 FitnessBrowser__Putida:PP_4041
MPAQIEDYALLGNCRSAALVSRDGALDWLCLPRFDAPAVFAALLGNEENGRWRLAPCDPV
THSSRQYLGDTLVLETTWVTASGRARVLDFMPLGEVNSVVRIVEGLSGETHFEMDLVMRF
DYGRSVPWVERLDPLTLSAVAGPDRLILCSTVPPQARDHHTGCRFRVSTGQRQVFSLRHQ
PSHLPVQPDCNIDQALANTCEQWQAFADRCPQVGPYTALVRRSLLTLKAMTYAPTGGIVA
AVTTSLPERVGGERNWDYRFCWLRDATMTLLAFMNLGYFDEAQAWREWLLRSVAGNPEQM
QIMYGLAGERDLQEYTLPWLAGYEHSQPVRVGNAASAQRQLDIYGELADAMTQAIKGGLP
RHPRSAAISRLILPYVERIWREPDEGIWEVRGGRQQFVHSKVMAWVAFDRAAGLADTTEE
GRERGQHYRQVADEIHRDVCEHGLDPSGRFFVHAYGSTEMDASLLQIALTGFLPADDPRF
MRTLEQIEQRLMKNGLLLRYDSDSCSDGLTPGEGTFLVCSFWLADVYVLLGRQAKAEALY
QHLTGLCNDLGLLAEQYDPAGQRMLGNFPQAFSQIGIINTALNLHRAQCPARDRARCG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory