Comparing PP_4140 FitnessBrowser__Putida:PP_4140 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 8 hits to proteins with known functional sites (download)
6q6iA Lysine decarboxylase a from pseudomonas aeruginosa
78% identity, 99% coverage: 2:745/749 of query aligns to 1:748/749 of 6q6iA
2vycA Crystal structure of acid induced arginine decarboxylase from e. Coli (see paper)
40% identity, 98% coverage: 9:745/749 of query aligns to 3:753/755 of 2vycA
P28629 Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli (strain K12) (see paper)
40% identity, 98% coverage: 9:745/749 of query aligns to 3:753/755 of P28629
5xx1G Crystal structure of arginine decarboxylase (adia) from salmonella typhimurium (see paper)
39% identity, 98% coverage: 9:745/749 of query aligns to 4:733/735 of 5xx1G
6q7lA Inducible lysine decarboxylase (see paper)
41% identity, 88% coverage: 92:747/749 of query aligns to 76:711/711 of 6q7lA
3n75A X-ray crystal structure of the escherichia coli inducible lysine decarboxylase ldci (see paper)
41% identity, 88% coverage: 92:747/749 of query aligns to 76:711/711 of 3n75A
1c4kA Ornithine decarboxylase mutant (gly121tyr) (see paper)
35% identity, 86% coverage: 93:739/749 of query aligns to 56:707/728 of 1c4kA
1ordA Crystallographic structure of a plp-dependent ornithine decarboxylase from lactobacillus 30a to 3.1 angstroms resolution (see paper)
35% identity, 86% coverage: 93:739/749 of query aligns to 56:709/730 of 1ordA
>PP_4140 FitnessBrowser__Putida:PP_4140
MYKDLKFPILIVHRAIKADSVAGERVRGIAEELRQDGFAILAAADHAEARLVAATHHGLA
CMLIAAEGAGENTHLLQNMAELIRLARLRAPNLPIFALGEQVTLENAPAEAMSELNQLRG
ILYLFEDTVPFLARQVARAAHTYLDGLLPPFFKALVQHTAQSNYSWHTPGHGGGVAYHKS
PVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAEAEARAARNFGADHTFFVINGTS
TANKIVWHAMVGRDDLVLVDRNCHKSVVHAIIMTGAIPLYLCPERNELGIIGPIPLSEFS
PEAIAAKIQANPLARDRGQRIKLAVVTNSTYDGLCYHAGLIKQALGASVEVLHFDEAWFA
YAAFHDFFTGRYAMGTACAADSPLVFSTHSTHKLLAAFSQASMIHVQDGARRQLDRDRFN
EAFMMHISTSPQYSILASLDVASTMMEGPAGRSLLQEMFDEALSFRRALANLREHIAAAD
WWFSIWQPPSAEGIPRLAAQDWLLQPGAQWHGFGEVVTDYVLLDPLKVTLVMPGLSADGV
LGARGIPAAVVSKFLWERGLVVEKTGLYSFLVLFSMGITKGKWSTLLTELLEFKRHYDGN
TPLSSCLPSVGAADALRYQGMGLRDLCDQLHDCYRANATAKQLKRLFTRLPEVAVSPAQA
YDKMVRGEVEAVPIEALLGRVAAVMLVPYPPGIPLIMPGERFTEATRSILDYLAFARAFN
QGFPGFVADVHGLQHEGGRYTVDCITECA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory