Comparing PP_4282 FitnessBrowser__Putida:PP_4282 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P60844 Aquaporin Z; Bacterial nodulin-like intrinsic protein; Water channel AqpZ from Escherichia coli (strain K12) (see paper)
70% identity, 98% coverage: 5:229/230 of query aligns to 3:229/231 of P60844
2o9eA Crystal structure of aqpz mutant t183c complexed with mercury (see paper)
69% identity, 98% coverage: 5:229/230 of query aligns to 5:231/232 of 2o9eA
3nkaA Crystal structure of aqpz h174g,t183f (see paper)
69% identity, 97% coverage: 5:228/230 of query aligns to 5:230/230 of 3nkaA
P08995 Nodulin-26; N-26 from Glycine max (Soybean) (Glycine hispida) (see paper)
38% identity, 96% coverage: 5:224/230 of query aligns to 38:245/271 of P08995
Sites not aligning to the query:
P55088 Aquaporin-4; AQP-4; Mercurial-insensitive water channel; MIWC; WCH4 from Mus musculus (Mouse) (see 2 papers)
35% identity, 96% coverage: 5:224/230 of query aligns to 36:249/323 of P55088
Sites not aligning to the query:
Q9XF58 Aquaporin PIP2-5; Plasma membrane intrinsic protein 2-5; ZmPIP2-5; ZmPIP2;5; ZmPIP2a from Zea mays (Maize) (see paper)
34% identity, 97% coverage: 2:224/230 of query aligns to 34:267/285 of Q9XF58
P61837 Aquaporin PIP1-1; AtPIP1;1; Plasma membrane aquaporin-1; Plasma membrane intrinsic protein 1a; PIP1a from Arabidopsis thaliana (Mouse-ear cress) (see paper)
37% identity, 94% coverage: 9:224/230 of query aligns to 56:273/286 of P61837
Sites not aligning to the query:
Q06611 Aquaporin PIP1-2; AtPIP1;2; Plasma membrane intrinsic protein 1b; PIP1b; Transmembrane protein A; AthH2; TMP-A from Arabidopsis thaliana (Mouse-ear cress) (see paper)
37% identity, 94% coverage: 9:224/230 of query aligns to 56:273/286 of Q06611
Sites not aligning to the query:
P47863 Aquaporin-4; AQP-4; Mercurial-insensitive water channel; MIWC; WCH4 from Rattus norvegicus (Rat) (see 4 papers)
33% identity, 96% coverage: 5:224/230 of query aligns to 36:249/323 of P47863
Sites not aligning to the query:
Q08733 Aquaporin PIP1-3; AtPIP1;3; Plasma membrane intrinsic protein 1c; PIP1c; Transmembrane protein B; TMP-B from Arabidopsis thaliana (Mouse-ear cress) (see paper)
36% identity, 95% coverage: 9:226/230 of query aligns to 56:275/286 of Q08733
Sites not aligning to the query:
P56402 Aquaporin-2; AQP-2; ADH water channel; Aquaporin-CD; AQP-CD; Collecting duct water channel protein; WCH-CD; Water channel protein for renal collecting duct from Mus musculus (Mouse) (see 2 papers)
37% identity, 95% coverage: 9:226/230 of query aligns to 15:222/271 of P56402
Sites not aligning to the query:
P43286 Aquaporin PIP2-1; Plasma membrane intrinsic protein 2-1; AtPIP2;1; Plasma membrane intrinsic protein 2a; PIP2a from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
36% identity, 80% coverage: 34:218/230 of query aligns to 77:261/287 of P43286
Sites not aligning to the query:
Q39196 Probable aquaporin PIP1-4; Plasma membrane intrinsic protein 1-4; AtPIP1;4; Transmembrane protein C; TMP-C from Arabidopsis thaliana (Mouse-ear cress) (see paper)
35% identity, 95% coverage: 9:226/230 of query aligns to 57:276/287 of Q39196
Sites not aligning to the query:
8ct2D Local refinement of aqp1 tetramer (c1; refinement mask included d1 of protein 4.2 and ankyrin-1 ar1-5) in class 2 of erythrocyte ankyrin-1 complex (see paper)
39% identity, 80% coverage: 40:223/230 of query aligns to 50:225/247 of 8ct2D
8sjxA Structure of lens aquaporin-0 array in sphingomyelin/cholesterol bilayer (2sm:1chol)
35% identity, 98% coverage: 2:226/230 of query aligns to 3:217/220 of 8sjxA
P43287 Aquaporin PIP2-2; Plasma membrane intrinsic protein 2-2; AtPIP2;2; Plasma membrane intrinsic protein 2b; PIP2b; TMP2b from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
35% identity, 80% coverage: 34:218/230 of query aligns to 75:259/285 of P43287
Sites not aligning to the query:
P06624 Lens fiber major intrinsic protein; Aquaporin-0; MIP26; MP26 from Bos taurus (Bovine) (see 4 papers)
34% identity, 98% coverage: 2:226/230 of query aligns to 8:222/263 of P06624
Sites not aligning to the query:
P30302 Aquaporin PIP2-3; Plasma membrane intrinsic protein 2-3; AtPIP2;3; Plasma membrane intrinsic protein 2c; PIP2c; RD28-PIP; TMP2C; Water stress-induced tonoplast intrinsic protein; WSI-TIP from Arabidopsis thaliana (Mouse-ear cress) (see paper)
34% identity, 83% coverage: 34:224/230 of query aligns to 75:265/285 of P30302
P09011 Lens fiber major intrinsic protein; Aquaporin-0; MIP26; MP26 from Rattus norvegicus (Rat) (see 2 papers)
34% identity, 97% coverage: 2:223/230 of query aligns to 6:217/261 of P09011
Sites not aligning to the query:
P55064 Aquaporin-5; AQP-5 from Homo sapiens (Human) (see 2 papers)
36% identity, 95% coverage: 5:223/230 of query aligns to 12:221/265 of P55064
>PP_4282 FitnessBrowser__Putida:PP_4282
MSLGKRMGAELIGTFWLVLGGCGSAVLAASSPLGIGVLGVAFAFGLTVLTMAFAIGHISG
CHLNPAVSFGLVVGGRFPAKELLPYVIAQVIGAILAAGVIYLIASGKAGFELSAGLASNG
YADHSPGGYTLGAGFVSEVVMTAMFLVVIMGATDARAPAGFAPIAIGLALTLIHLISIPV
TNTSVNPARSTGPALFVGGWALQQLWLFWVAPLIGAAIGGALYRGLAKEP
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory