SitesBLAST – Find functional sites

 

SitesBLAST

Comparing PP_4311 FitnessBrowser__Putida:PP_4311 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

6j39A Crystal structure of cmis2 with inhibitor (see paper)
30% identity, 38% coverage: 245:396/397 of query aligns to 197:351/368 of 6j39A

query
sites
6j39A
E
 
D
Q
 
R
L
 
V
V
 
V
L
 
L
C
 
S
A
|
A
G
 
G
-
 
C
-
x
W
-
 
T
H
 
H
R
 
R
G
 
L
P
 
A
G
 
G
L
 
L
A
 
-
L
 
-
P
 
P
G
 
A
V
 
G
Q
 
A
I
 
V
P
 
P
-
 
E
V
 
I
Y
 
A
P
 
P
L
 
A
K
 
K
G
 
G
Y
 
Q
S
x
I
L
 
L
T
 
R
A
 
L
P
 
R
I
 
S
S
 
A
A
 
A
G
 
P
H
 
F
L
 
L
P
 
R
P
 
R
E
 
A
V
 
T
-
x
R
S
 
A
L
 
V
T
 
T
D
 
R
Y
 
G
E
 
S
R
 
G
K
 
V
I
x
Y
V
 
L
Y
 
V
A
 
P
R
 
R
L
 
T
G
 
D
Q
 
G
Q
 
E
L
 
L
R
 
V
V
 
V
A
 
G
A
 
A
M
 
T
V
x
Y
D
 
E
I
 
E
V
 
R
G
 
D
F
 
Y
D
 
D
E
 
T
S
 
T
V
 
V
D
 
T
M
 
A
R
 
G
R
 
G
L
 
V
Q
 
A
S
 
E
M
 
L
R
 
L
R
 
G
L
 
K
A
 
V
L
 
L
E
 
A
T
 
V
L
 
L
P
 
P
R
 
G
A
 
A
A
 
A
D
 
E
Y
 
L
G
 
E
Q
 
L
A
 
A
V
 
E
E
 
T
W
 
A
A
 
A
G
 
G
M
 
L
R
|
R
P
 
P
A
 
G
T
 
S
P
 
P
T
 
D
G
 
G
V
 
L
P
 
P
I
 
V
I
 
L
G
 
G
G
 
W
T
 
T
V
 
A
Y
 
V
R
 
P
N
 
N
L
 
L
W
 
L
L
 
V
N
 
A
L
 
T
G
 
G
H
 
H
G
x
S
A
x
R
L
x
I
G
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G
F
x
V
T
x
Q
L
 
L
A
 
A
C
 
P
G
 
I
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T
A
 
A
Q
 
D
R
 
V
L
 
M
A
 
G
R
 
E
M
 
M
M
 
L

Sites not aligning to the query:

6j38A Crystal structure of cmis2 (see paper)
30% identity, 38% coverage: 245:396/397 of query aligns to 197:351/368 of 6j38A

query
sites
6j38A
E
 
D
Q
 
R
L
 
V
V
 
V
L
 
L
C
 
S
A
|
A
G
 
G
-
 
C
-
x
W
-
 
T
H
 
H
R
 
R
G
 
L
P
 
A
G
 
G
L
 
L
A
 
-
L
 
-
P
 
P
G
 
A
V
 
G
Q
 
A
I
 
V
P
 
P
-
 
E
V
 
I
Y
 
A
P
 
P
L
 
A
K
 
K
G
|
G
Y
 
Q
S
 
I
L
 
L
T
 
R
A
 
L
P
 
R
I
 
S
S
 
A
A
 
A
G
 
P
H
 
F
L
 
L
P
 
R
P
 
R
E
 
A
V
 
T
-
 
R
S
 
A
L
 
V
T
 
T
D
 
R
Y
 
G
E
 
S
R
 
G
K
 
V
I
 
Y
V
 
L
Y
 
V
A
 
P
R
 
R
L
 
T
G
 
D
Q
 
G
Q
 
E
L
 
L
R
 
V
V
 
V
A
 
G
A
 
A
M
 
T
V
 
Y
D
 
E
I
 
E
V
 
R
G
 
D
F
 
Y
D
 
D
E
 
T
S
 
T
V
 
V
D
 
T
M
 
A
R
 
G
R
 
G
L
 
V
Q
 
A
S
 
E
M
 
L
R
 
L
R
 
G
L
 
K
A
 
V
L
 
L
E
 
A
T
 
V
L
 
L
P
 
P
R
 
G
A
 
A
A
 
A
D
 
E
Y
 
L
G
 
E
Q
 
L
A
 
A
V
 
E
E
 
T
W
 
A
A
 
A
G
|
G
M
 
L
R
|
R
P
 
P
A
 
G
T
 
S
P
 
P
T
 
D
G
 
G
V
 
L
P
 
P
I
 
V
I
 
L
G
 
G
G
 
W
T
 
T
V
 
A
Y
 
V
R
 
P
N
 
N
L
 
L
W
 
L
L
 
V
N
 
A
L
 
T
G
 
G
H
 
H
G
x
S
A
x
R
L
x
I
G
|
G
F
x
V
T
x
Q
L
 
L
A
 
A
C
 
P
G
 
I
S
 
T
A
 
A
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D
R
 
V
L
 
M
A
 
G
R
 
E
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M
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L

Sites not aligning to the query:

Query Sequence

>PP_4311 FitnessBrowser__Putida:PP_4311
MKQRVTVIGGGVVGLATAYALVREGWSVDLIEARDSLASATSFANGGQLSYRYVAPLADA
GVPWQALGWLLRGESPLRLRLRMDPAQWRWLLAFTLACRRSVNRRNAGQLLELALCSQAV
LAQWREDHNLGDFGWRRNGKLVAFRSERAFAQGREQLTDPASQQVLAAAELRGLEPALDG
APFVGGVFTAGEEVGDCHVFCLRLEALLRASGQCRFLLGRPVTQLVQRQGQVVALQLGDQ
QLDVEQLVLCAGHRGPGLALPGVQIPVYPLKGYSLTAPISAGHLPPEVSLTDYERKIVYA
RLGQQLRVAAMVDIVGFDESVDMRRLQSMRRLALETLPRAADYGQAVEWAGMRPATPTGV
PIIGGTVYRNLWLNLGHGALGFTLACGSAQRLARMMR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory