Comparing PP_4311 FitnessBrowser__Putida:PP_4311 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 2 hits to proteins with known functional sites (download)
6j39A Crystal structure of cmis2 with inhibitor (see paper)
30% identity, 38% coverage: 245:396/397 of query aligns to 197:351/368 of 6j39A
Sites not aligning to the query:
6j38A Crystal structure of cmis2 (see paper)
30% identity, 38% coverage: 245:396/397 of query aligns to 197:351/368 of 6j38A
Sites not aligning to the query:
>PP_4311 FitnessBrowser__Putida:PP_4311
MKQRVTVIGGGVVGLATAYALVREGWSVDLIEARDSLASATSFANGGQLSYRYVAPLADA
GVPWQALGWLLRGESPLRLRLRMDPAQWRWLLAFTLACRRSVNRRNAGQLLELALCSQAV
LAQWREDHNLGDFGWRRNGKLVAFRSERAFAQGREQLTDPASQQVLAAAELRGLEPALDG
APFVGGVFTAGEEVGDCHVFCLRLEALLRASGQCRFLLGRPVTQLVQRQGQVVALQLGDQ
QLDVEQLVLCAGHRGPGLALPGVQIPVYPLKGYSLTAPISAGHLPPEVSLTDYERKIVYA
RLGQQLRVAAMVDIVGFDESVDMRRLQSMRRLALETLPRAADYGQAVEWAGMRPATPTGV
PIIGGTVYRNLWLNLGHGALGFTLACGSAQRLARMMR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory